Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 0.0e+00 1152.9 589 100.0
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 4.0e-312 1074.7 598 91.6
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 7.8e-298 1026.5 595 89.2
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 2.9e-284 981.5 597 86.1
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.2e-277 959.5 596 84.6
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 9.9e-277 956.4 595 84.0
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 2.0e-261 905.6 582 81.3
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 4.2e-251 871.3 596 78.5
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 7.1e-251 870.5 565 80.9
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 3.4e-245 851.7 565 79.8
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 7.6e-245 850.5 570 78.9
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 4.6e-242 841.3 594 76.6
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 4.1e-222 775.0 505 78.2
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.4e-182 643.7 601 57.9
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 2.0e-181 639.8 605 57.9
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 2.7e-181 639.4 625 58.7
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 9.5e-179 630.9 605 57.0
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 2.1e-178 629.8 641 55.4
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 2.3e-177 626.3 615 56.9
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 4.0e-177 625.5 611 57.1
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 5.2e-177 625.2 602 57.8
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 2.6e-176 622.9 605 56.5
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 3.4e-176 622.5 604 56.6
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 5.8e-176 621.7 606 55.9
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 2.2e-175 619.8 613 56.0
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.1e-174 617.5 604 56.1
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 7.1e-174 614.8 596 55.2
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 1.6e-173 613.6 606 56.3
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 7.8e-173 611.3 618 56.3
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.5e-171 606.3 606 54.8
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 2.5e-171 606.3 609 56.0
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 3.3e-171 605.9 609 55.8
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 6.8e-169 598.2 640 52.8
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 6.8e-169 598.2 623 53.9
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 8.9e-169 597.8 609 54.4
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 8.9e-169 597.8 603 55.1
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 4.4e-168 595.5 582 56.7
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 5.8e-168 595.1 598 55.4
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 9.9e-168 594.3 603 55.6
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.8e-167 592.4 622 53.4
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 8.4e-167 591.3 604 55.5
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 7.1e-166 588.2 604 53.8
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 3.5e-165 585.9 589 56.5
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.5e-163 580.5 603 51.9
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 9.6e-163 577.8 610 53.6
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 2.8e-162 576.2 592 53.5
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.1e-158 564.3 607 53.9
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 6.0e-157 558.5 611 52.7
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 7.8e-157 558.1 609 52.5
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 1.1e-155 554.3 627 50.6
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.5e-155 553.9 604 52.0
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.5e-155 553.9 564 54.8
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 3.3e-155 552.7 601 51.9
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 5.6e-155 552.0 600 52.3
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 7.3e-155 551.6 579 53.2
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 4.8e-154 548.9 601 51.7
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 8.1e-154 548.1 561 54.5
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 1.8e-153 547.0 587 51.1
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 3.1e-153 546.2 563 53.8
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 1.2e-152 544.3 604 51.5
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.6e-152 543.1 623 51.0
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 4.5e-152 542.3 601 50.9
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 7.6e-152 541.6 571 52.4
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 2.9e-151 539.7 531 53.7
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 2.9e-151 539.7 569 53.3
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 8.4e-151 538.1 532 54.1
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 1.9e-150 537.0 609 50.7
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 4.2e-150 535.8 607 50.6
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 7.1e-150 535.0 619 49.8
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 1.6e-149 533.9 605 49.3
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 2.1e-149 533.5 605 51.1
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 1.8e-148 530.4 551 52.6
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 8.7e-148 528.1 605 50.1
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 8.7e-148 528.1 509 57.6
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 1.9e-147 526.9 604 50.7
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.8e-146 523.1 539 52.3
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 6.9e-145 518.5 593 50.1
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 2.0e-144 516.9 595 49.6
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 2.2e-143 513.5 515 55.1
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 2.7e-141 506.5 537 51.8
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 8.7e-140 501.5 626 48.4
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 5.6e-139 498.8 653 45.9
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.6e-138 497.3 659 46.3
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.5e-136 490.7 601 48.6
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 1.9e-134 483.8 634 47.0
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 6.0e-133 478.8 565 48.5
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 1.9e-131 473.8 623 45.3
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 1.9e-131 473.8 589 47.9
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 6.3e-130 468.8 587 46.2
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 3.1e-129 466.5 631 46.1
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 9.0e-129 464.9 496 52.6
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.0e-127 461.5 626 46.2
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.7e-122 443.0 435 54.5
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 6.9e-121 438.7 526 48.9
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 5.9e-120 435.6 579 44.0
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 3.0e-116 423.3 412 53.9
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 2.4e-113 413.7 488 46.1
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.3e-92 344.0 450 48.2
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 7.0e-89 332.4 546 37.2
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 3.4e-83 313.5 490 40.8
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 6.3e-82 309.3 518 38.2
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 1.6e-72 278.1 605 34.4
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 2.6e-59 234.2 301 49.8
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.9e-58 230.7 317 40.7
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 7.6e-51 206.1 194 54.1
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 1.7e-47 194.9 191 55.0
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 8.4e-42 176.0 568 27.5
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 1.1e-30 139.0 417 27.6
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.9e-25 121.7 579 22.8
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 2.1e-24 118.2 382 27.5
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 9.6e-22 109.4 123 48.8
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.7e-18 98.6 125 46.4
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.7e-18 98.6 125 46.4
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.9e-18 97.8 125 46.4
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.9e-18 97.8 125 46.4
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 7.7e-11 73.2 58 65.5
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 1.4e-09 68.9 285 23.5
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 1.9e-09 68.6 354 22.6
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.5e-09 68.2 303 25.1
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.5e-09 68.2 303 25.1
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.5e-09 68.2 134 32.1
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 5.5e-09 67.0 304 24.7
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 7.2e-09 66.6 314 23.6
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 9.4e-09 66.2 314 23.6
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 1.2e-08 65.9 325 23.4
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 1.2e-08 65.9 325 23.4
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.7e-08 64.7 67 55.2
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 3.6e-08 64.3 292 23.6
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 6.1e-08 63.5 267 22.1
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 6.1e-08 63.5 267 23.2
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 6.1e-08 63.5 267 23.2
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 1.8e-07 62.0 311 23.8
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 1.8e-07 62.0 299 24.7
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 3.0e-07 61.2 264 22.3
Prupe.8G068000 Prunus persica HOM05D004977 ORTHO05D006454 3.0e-07 61.2 269 24.5
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 5.1e-07 60.5 288 22.6
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 5.1e-07 60.5 337 22.6
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 5.1e-07 60.5 349 22.9
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 1.1e-06 59.3 292 23.6
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 1.1e-06 59.3 267 22.1
Aa31LG1G13410 Aethionema arabicum HOM05D004977 ORTHO05D006454 1.5e-06 58.9 264 22.7
Ciclev10027762m.g Citrus clementina HOM05D004977 ORTHO05D006454 2.5e-06 58.2 264 23.5
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 2.5e-06 58.2 336 23.2
unitig_699.g19732 Utricularia gibba HOM05D004977 ORTHO05D006454 3.3e-06 57.8 267 23.2
CiPaw.13G126500 Carya illinoinensis HOM05D004977 ORTHO05D006454 4.3e-06 57.4 269 22.7
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 7.4e-06 56.6 269 22.3


User provided reference genes

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