Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.9e-290 1001.9 531 100.0
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.9e-231 805.8 621 73.9
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 2.4e-221 772.3 639 69.3
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-184 649.8 620 63.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.8e-177 625.9 623 62.0
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.9e-163 578.9 697 54.4
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.9e-162 576.6 603 59.7
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.9e-162 576.6 603 59.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 6.8e-160 568.2 603 58.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-157 560.8 626 57.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.7e-153 545.4 680 52.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.0e-152 542.3 684 52.2
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 6.8e-152 541.6 691 51.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.7e-150 537.0 655 53.0
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 8.7e-147 524.6 606 55.9
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 2.5e-138 496.5 678 49.9
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-128 463.4 655 49.3
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.0e-120 434.9 255 91.4
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 1.8e-104 384.0 750 42.8
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.6e-100 370.9 620 45.0
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.7e-97 359.8 741 40.2
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.4e-93 345.1 782 39.9
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 8.0e-92 342.0 686 40.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 9.1e-88 328.6 601 41.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.5e-85 320.5 617 40.8
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 4.7e-84 316.2 589 41.8
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 8.0e-84 315.5 589 41.9
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.6e-82 310.5 738 37.5
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-81 307.4 643 41.1
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.8e-81 307.0 669 37.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 6.3e-81 305.8 597 40.7
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-80 303.9 649 40.4
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 2.4e-80 303.9 649 40.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 3.1e-80 303.5 590 41.5
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.5e-79 300.1 856 34.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.2e-77 293.5 580 40.5
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.6e-76 290.0 786 35.0
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.0e-75 287.0 551 41.2
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-74 284.6 611 41.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.3e-73 279.3 616 38.8
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.2e-71 275.0 730 36.8
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.0e-67 260.4 576 38.7
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 1.5e-66 258.1 665 35.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.2e-65 254.2 631 37.6
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.5e-63 246.9 634 35.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 6.0e-47 193.0 541 35.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-45 188.7 610 33.6
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 9.5e-45 185.7 641 33.4
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.2e-44 185.3 564 33.0
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 3.6e-44 183.7 662 32.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 8.1e-44 182.6 606 34.3
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.6e-42 177.6 628 33.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 7.1e-40 169.5 661 30.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.2e-39 168.7 592 31.9
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.6e-39 168.3 636 30.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.3e-38 165.2 530 35.3
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.8e-36 157.5 606 31.5
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.2e-35 153.3 115 78.3
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.0e-34 151.4 582 31.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 4.4e-34 150.2 590 31.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.3e-33 148.7 355 36.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.8e-33 147.1 372 36.3
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 8.4e-33 146.0 571 32.4
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.4e-32 144.4 397 34.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.4e-32 144.4 377 36.1
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 4.2e-32 143.7 363 38.0
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.6e-31 141.7 611 30.6
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.7e-31 141.0 637 30.9
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.6e-31 140.2 371 34.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.0e-31 139.8 388 35.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.8e-31 139.4 561 30.7
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 8.7e-30 136.0 159 56.6
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 4.3e-29 133.7 343 35.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.6e-28 131.7 349 34.7
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.1e-28 131.3 498 32.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.8e-28 131.0 623 27.3
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.1e-27 129.0 505 30.7
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 9.0e-27 125.9 485 29.5
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.2e-26 125.6 361 33.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.5e-26 125.2 522 29.3
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.6e-26 124.4 555 30.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.4e-26 124.0 570 29.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 4.5e-26 123.6 544 28.3
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-25 122.1 485 30.3
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.9e-25 120.2 509 32.2
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-24 119.0 472 29.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.9e-24 118.2 575 30.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.9e-24 118.2 471 31.0
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.4e-24 117.9 524 29.2
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.7e-23 114.4 415 32.3
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 6.0e-23 113.2 442 27.6
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.8e-22 111.7 430 28.6
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.0e-22 110.9 373 31.6
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 3.9e-22 110.5 485 29.5
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 3.9e-22 110.5 640 29.1
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 5.1e-22 110.2 335 32.5
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.7e-22 109.8 685 27.6
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 8.7e-22 109.4 421 30.6
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.1e-21 109.0 446 30.9
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 7.4e-21 106.3 447 29.5
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-20 105.5 525 29.3
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.3e-20 105.5 513 28.5
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.6e-20 105.1 597 28.1
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.6e-20 105.1 536 27.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-20 104.8 597 27.1
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 2.1e-20 104.8 710 26.5
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.7e-20 104.0 471 29.7
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.8e-20 103.6 640 27.3
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 8.1e-20 102.8 591 27.9
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.4e-19 102.1 101 57.4
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.8e-19 101.7 562 27.4
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.8e-19 101.7 288 33.3
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 3.1e-19 100.9 101 56.4
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 5.3e-19 100.1 713 26.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 5.3e-19 100.1 170 40.0
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 6.9e-19 99.8 101 56.4
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 6.9e-19 99.8 101 55.4
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 9.0e-19 99.4 339 31.9
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.2e-18 99.0 268 33.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.4e-18 97.4 542 26.8
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 3.4e-18 97.4 350 29.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 5.8e-18 96.7 640 27.3
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.3e-17 95.5 379 29.0
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 1.7e-17 95.1 288 34.4
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.9e-17 94.4 527 30.0
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 3.8e-17 94.0 459 29.6
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 8.4e-17 92.8 290 29.7
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.9e-16 91.7 533 27.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.9e-16 91.7 527 25.8
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 1.6e-15 88.6 121 44.6
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 4.6e-15 87.0 470 28.7
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.3e-14 85.5 264 32.2
CARHR119580 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.8e-14 85.1 70 64.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.8e-14 85.1 652 27.3
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.3e-14 84.7 225 34.7
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 3.0e-14 84.3 57 70.2
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.0e-14 84.3 279 31.2
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 5.1e-14 83.6 435 26.0
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 6.7e-14 83.2 494 28.7
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 8.7e-14 82.8 448 26.1
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 8.7e-14 82.8 524 27.9
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 1.1e-13 82.4 57 68.4
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.1e-13 82.4 382 27.7
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-13 82.0 402 28.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.9e-13 81.6 285 31.6
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 2.5e-13 81.3 57 68.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.5e-13 81.3 507 26.8
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.6e-12 78.6 695 25.3
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.1e-12 78.2 381 27.6
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 1.4e-11 75.5 280 31.4
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.8e-11 75.1 142 43.0
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 5.3e-11 73.6 267 30.7
BcaB05g21948 Brassica carinata HOM05D000139 ORTHO05D000103 6.9e-11 73.2 82 54.9
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.2e-10 72.4 248 29.8
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 3.4e-10 70.9 230 33.0
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.0e-09 69.3 382 28.5
C09p27570 Brassica napus HOM05D019620 ORTHO05D024594 8.4e-09 66.2 137 39.4
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 2.5e-08 64.7 310 28.4
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 2.5e-08 64.7 153 34.6
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 7.1e-08 63.2 233 33.0
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.5e-07 60.8 192 33.3
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.6e-07 60.5 147 36.7
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 7.9e-07 59.7 206 28.2
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.9e-07 59.7 177 34.5
C01p38190 Brassica napus HOM05D027100 ORTHO05D027161 1.0e-06 59.3 97 49.5
C04p49450 Brassica napus HOM05D019620 ORTHO05D041375 1.0e-06 59.3 126 41.3
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.3e-06 58.9 558 25.1
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 1.3e-06 58.9 336 27.4
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.0e-06 57.8 174 32.2
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 3.9e-06 57.4 189 31.2
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 5.1e-06 57.0 137 33.6
BcaC07g36822 Brassica carinata HOM05D030889 ORTHO05D027098 6.7e-06 56.6 115 44.3
C03p07130 Brassica napus HOM05D027100 ORTHO05D027161 6.7e-06 56.6 97 48.5
C08p01910 Brassica napus HOM05D030889 ORTHO05D027098 6.7e-06 56.6 115 44.3
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 6.7e-06 56.6 176 30.7


User provided reference genes

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