Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.0e-99 364.8 184 100.0
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.8e-96 355.9 184 96.7
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 7.8e-95 350.5 184 96.2
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.3e-94 349.7 184 95.7
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 8.9e-91 337.0 185 93.0
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.6e-90 335.5 184 89.7
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.7e-87 325.5 184 87.0
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 5.0e-86 321.2 184 85.3
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 84.8
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.0e-82 309.3 183 82.0
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.0e-82 309.3 185 83.2
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 3.2e-80 302.0 193 78.2
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 3.2e-80 302.0 182 79.1
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 3.2e-80 302.0 182 79.1
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 3.2e-80 302.0 182 79.1
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 6.0e-79 297.7 186 85.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 5.1e-78 294.7 184 76.6
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 6.6e-78 294.3 185 80.5
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.1e-77 293.5 182 76.4
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.1e-77 293.5 182 76.4
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.5e-77 293.1 184 76.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.5e-77 292.4 182 75.8
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 3.3e-77 292.0 177 80.8
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 4.3e-77 291.6 184 76.1
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.3e-77 290.8 184 75.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 75.0
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 75.0
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-76 290.0 184 75.0
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 2.1e-76 289.3 184 76.1
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 2.8e-76 288.9 184 76.6
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.7e-76 288.1 184 74.5
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 6.2e-76 287.7 184 73.9
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 8.1e-76 287.3 184 74.5
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.1e-75 287.0 184 75.5
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 3.1e-75 285.4 184 75.0
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 6.8e-75 284.3 184 72.8
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 6.8e-75 284.3 184 74.5
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 8.9e-75 283.9 184 73.9
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 8.9e-75 283.9 184 72.3
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 8.9e-75 283.9 184 72.3
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 8.9e-75 283.9 184 74.5
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 1.2e-74 283.5 182 74.2
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 73.1
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 72.8
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 4.4e-74 281.6 184 73.4
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 5.8e-74 281.2 181 72.4
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 5.8e-74 281.2 184 71.7
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 5.8e-74 281.2 184 71.7
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 5.8e-74 281.2 177 75.7
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.8e-74 281.2 177 75.7
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 7.6e-74 280.8 178 75.3
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 7.6e-74 280.8 183 71.6
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.7e-73 279.6 184 70.7
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.2e-73 279.3 184 72.3
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.9e-73 278.9 184 70.1
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.7e-73 278.5 184 70.1
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 3.7e-73 278.5 184 71.2
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.7e-73 278.5 184 72.8
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 4.9e-73 278.1 185 73.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.1e-72 276.9 180 71.7
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.1e-72 276.9 184 71.2
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.4e-72 276.6 184 72.8
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.9e-72 276.2 184 69.0
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 4.1e-72 275.0 184 70.1
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.1e-72 275.0 184 72.8
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 5.4e-72 274.6 184 70.7
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 9.2e-72 273.9 178 73.0
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 9.2e-72 273.9 184 71.2
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 9.2e-72 273.9 182 72.5
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.2e-71 273.5 184 69.0
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.2e-71 273.5 184 71.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.6e-71 273.1 184 71.7
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.1e-71 272.7 182 70.9
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.1e-71 272.7 185 72.4
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.1e-71 272.7 177 71.8
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 2.1e-71 272.7 184 68.5
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.7e-71 272.3 184 71.2
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 3.5e-71 271.9 184 69.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.6e-71 271.6 184 67.9
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.6e-71 271.6 184 67.9
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 4.6e-71 271.6 182 68.7
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 6.0e-71 271.2 184 69.0
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 70.9
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.0e-70 270.4 178 70.8
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 70.3
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-70 270.0 182 68.7
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.3e-70 270.0 182 68.7
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.7e-70 269.6 182 68.7
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.7e-70 269.6 184 69.0
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 70.3
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 3.9e-70 268.5 178 70.8
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 3.9e-70 268.5 182 70.3
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 5.1e-70 268.1 184 68.5
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.1e-70 268.1 184 69.0
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 5.1e-70 268.1 182 69.8
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 8.6e-70 267.3 184 66.8
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.9e-69 266.2 178 70.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 5.6e-69 264.6 177 69.5
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.2e-68 263.5 182 69.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.8e-68 262.3 178 68.0
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.6e-68 261.9 181 70.2
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 3.6e-68 261.9 182 65.4
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 3.6e-68 261.9 178 68.5
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 8.1e-68 260.8 178 70.2
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 4.0e-67 258.5 184 65.8
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.0e-67 258.5 182 66.5
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.9e-67 257.3 182 66.5
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.2e-66 256.9 184 66.3
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-66 256.9 185 65.9
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.0e-66 256.1 177 69.5
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 2.6e-66 255.8 170 71.2
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 5.8e-66 254.6 182 66.5
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 9.9e-66 253.8 184 66.3
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 9.9e-66 253.8 179 65.9
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.3e-65 253.4 185 65.4
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.9e-65 252.3 184 65.2
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 8.4e-65 250.8 177 67.2
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 8.4e-65 250.8 185 64.3
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.9e-64 249.6 177 65.5
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.2e-64 248.4 185 64.3
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.6e-63 246.5 183 67.2
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.5e-63 245.4 179 64.2
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.0e-62 243.8 184 63.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.3e-62 242.7 182 62.1
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.8e-60 235.7 177 64.4
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 6.2e-60 234.6 182 66.5
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.4e-59 233.4 186 60.8
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 1.8e-59 233.0 178 62.9
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.2e-58 230.3 178 62.9
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 2.0e-58 229.6 184 62.0
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 8.4e-57 224.2 179 61.5
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.9e-53 213.0 176 61.9
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 9.6e-53 210.7 165 66.7
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 7.4e-45 184.5 184 52.7
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.7e-44 182.2 116 72.4
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.5e-41 171.4 122 65.6
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.1e-40 170.6 197 47.2
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 6.0e-39 164.9 160 51.2
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 2.6e-34 149.4 179 39.7
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.5e-32 142.9 99 71.7
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.0e-22 109.4 109 52.3
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.1e-21 107.5 76 67.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 2.5e-16 89.7 57 77.2
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 3.6e-15 85.9 59 67.8
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 7.9e-15 84.7 55 70.9
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 1.4e-14 84.0 164 30.5
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 7.0e-11 71.6 41 82.9


User provided reference genes

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