Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 5.6e-150 534.3 273 100.0
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 3.4e-147 525.0 273 98.2
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 4.6e-144 514.6 273 97.1
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 4.9e-138 494.6 272 93.8
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 4.6e-136 488.0 272 91.9
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.6e-136 488.0 273 91.6
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.3e-135 485.7 273 90.8
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 6.7e-135 484.2 272 90.8
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.5e-134 483.0 272 90.4
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 4.3e-134 481.5 272 90.8
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 4.3e-134 481.5 272 91.5
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 5.6e-134 481.1 271 90.8
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 9.6e-134 480.3 273 91.2
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 6.2e-133 477.6 271 90.4
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 8.2e-133 477.2 272 90.1
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.2e-131 473.4 272 89.7
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.7e-130 469.5 285 86.0
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.3e-124 448.0 272 85.3
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 2.3e-119 432.6 272 82.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.1e-118 430.3 273 78.8
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 5.7e-118 427.9 273 79.5
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.7e-118 427.9 273 79.1
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.7e-118 427.9 273 79.1
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 5.7e-118 427.9 273 79.1
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 5.7e-118 427.9 273 79.1
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 1.3e-117 426.8 272 81.2
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-117 426.8 273 77.7
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.7e-117 426.4 273 77.7
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.8e-117 424.9 273 78.0
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 6.3e-117 424.5 275 77.8
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 5.3e-116 421.4 273 78.4
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.9e-115 417.9 273 78.4
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.7e-115 417.5 273 78.8
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.7e-114 416.4 273 78.0
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.8e-114 415.2 273 75.8
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 3.8e-114 415.2 273 76.2
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 5.0e-114 414.8 275 75.6
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 2.5e-113 412.5 271 78.6
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 4.2e-113 411.8 317 70.7
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.2e-113 411.8 273 76.2
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 5.5e-113 411.4 272 77.9
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 7.2e-113 411.0 273 75.5
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 9.4e-113 410.6 273 74.0
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.4e-113 410.6 273 75.1
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-112 409.8 273 75.8
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.6e-112 409.8 273 75.8
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 2.1e-112 409.5 273 75.8
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 2.1e-112 409.5 273 75.8
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 2.1e-112 409.5 273 75.8
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 2.7e-112 409.1 275 80.0
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.7e-112 409.1 275 78.9
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.7e-112 409.1 283 73.9
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 4.7e-112 408.3 275 76.0
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 7.9e-112 407.5 273 75.8
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 7.9e-112 407.5 273 73.6
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.4e-111 406.8 273 74.7
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.3e-111 406.0 233 90.1
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 2.3e-111 406.0 273 73.3
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 5.1e-111 404.8 272 74.6
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 6.7e-111 404.4 274 75.2
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 6.7e-111 404.4 272 74.6
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 8.8e-111 404.1 273 74.7
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 2.6e-110 402.5 272 73.5
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.4e-110 401.7 273 73.6
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.4e-110 401.7 273 73.6
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 5.7e-110 401.4 271 72.3
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 7.4e-110 401.0 273 71.4
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 9.7e-110 400.6 272 72.8
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 9.7e-110 400.6 271 72.3
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.7e-110 400.6 273 73.6
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.3e-109 400.2 274 73.7
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.7e-109 399.8 274 73.7
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 1.7e-109 399.8 233 89.3
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.2e-109 399.4 274 74.1
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 2.8e-109 399.1 297 71.0
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 3.7e-109 398.7 273 71.4
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.4e-108 396.7 286 71.3
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.8e-108 396.4 275 73.8
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 1.0e-106 390.6 272 72.4
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.7e-106 389.8 276 72.5
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 4.2e-105 385.2 285 69.8
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 3.9e-103 378.6 275 70.9
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 3.9e-103 378.6 275 70.9
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.9e-103 378.6 275 70.5
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 5.2e-103 378.3 273 70.7
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 5.2e-103 378.3 342 59.9
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 5.2e-103 378.3 273 71.4
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.1e-102 377.1 308 64.9
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.1e-102 377.1 308 64.9
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.5e-102 376.7 332 60.5
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 2.0e-102 376.3 274 70.1
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 2.0e-102 376.3 274 70.8
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 2.6e-102 375.9 263 77.2
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.3e-102 375.6 273 70.3
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.3e-102 375.6 276 70.3
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.3e-101 373.6 273 71.1
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 1.7e-101 373.2 273 70.0
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 4.8e-101 371.7 273 70.7
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 6.3e-101 371.3 273 70.7
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 8.2e-101 370.9 295 64.1
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 2.4e-100 369.4 273 69.2
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 7.0e-100 367.9 275 71.3
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 1.6e-99 366.7 298 65.4
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.5e-99 365.2 289 67.1
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.3e-98 363.6 273 70.3
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.7e-98 363.2 273 69.2
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 2.2e-98 362.8 276 67.8
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 2.2e-98 362.8 275 69.8
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 2.9e-98 362.5 239 77.4
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 8.5e-98 360.9 279 67.7
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.9e-97 359.8 233 78.1
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.5e-97 359.4 256 69.9
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 7.2e-97 357.8 275 70.9
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 6.1e-96 354.8 276 68.8
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 6.1e-96 354.8 259 71.8
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.0e-95 354.0 276 68.8
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.4e-95 353.6 234 76.5
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 3.0e-95 352.4 276 68.1
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.0e-94 349.7 264 68.9
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.3e-94 349.0 275 66.9
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 2.2e-93 346.3 275 64.7
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.9e-90 335.9 334 56.6
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 1.0e-87 327.4 270 64.4
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.7e-85 320.1 281 64.1
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 1.7e-85 320.1 232 70.3
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 7.0e-84 314.7 237 67.5
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 9.1e-84 314.3 244 68.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.7e-83 312.8 276 60.5
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 8.0e-80 301.2 287 58.5
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 2.3e-79 299.7 234 68.4
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.0e-79 299.3 357 51.0
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 2.0e-78 296.6 340 52.1
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.1e-76 290.8 273 60.1
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.2e-76 289.3 292 55.8
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.3e-74 283.1 270 58.1
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 1.6e-72 276.9 236 66.5
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.8e-71 273.5 202 70.3
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 8.9e-71 271.2 184 73.4
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.6e-67 260.4 270 55.2
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 4.6e-67 258.8 183 73.2
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.7e-66 256.9 232 58.6
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 7.3e-65 251.5 165 78.2
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 4.7e-64 248.8 263 53.6
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.2e-64 248.4 174 72.4
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.4e-63 247.3 271 51.7
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.1e-63 246.1 263 52.5
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 4.0e-63 245.7 274 51.5
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 5.2e-63 245.4 278 50.0
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 4.4e-62 242.3 172 68.6
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 7.5e-62 241.5 204 64.2
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 4.9e-61 238.8 158 77.8
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 4.9e-61 238.8 230 60.0
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 3.3e-57 226.1 148 73.6
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.8e-56 223.0 166 70.5
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 9.2e-52 208.0 169 65.1
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 2.7e-51 206.5 131 78.6
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.0e-50 204.5 257 49.4
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 5.1e-50 202.2 234 52.1
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.6e-50 201.4 125 79.2
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 1.8e-47 193.7 263 45.6
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 3.4e-46 189.5 215 49.8
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 5.8e-46 188.7 151 66.9
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.6e-43 179.1 204 51.5
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 7.6e-38 161.8 136 64.7
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.1e-36 157.9 141 58.9
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 4.3e-33 146.0 274 37.2
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.2e-32 142.1 181 47.0
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-30 137.9 166 49.4
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 6.7e-26 122.1 151 51.7
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 6.7e-26 122.1 90 68.9
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 7.4e-25 118.6 88 67.0
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 4.0e-23 112.8 74 74.3
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.9e-20 104.0 70 71.4
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 4.2e-20 102.8 241 33.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.8e-18 97.4 69 71.0
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 3.0e-18 96.7 74 64.9
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.5e-09 67.8 138 35.5
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.5e-09 67.8 175 31.4
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.3e-09 66.2 42 78.6
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 2.2e-08 63.9 41 73.2
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 9.0e-07 58.5 34 79.4


User provided reference genes

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