Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 0.0e+00 1327.4 676 100.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 8.3e-304 1046.6 699 79.4
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-273 946.0 706 74.8
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 5.3e-242 841.3 704 67.5
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-212 743.4 709 61.1
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 8.0e-206 721.1 706 61.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.9e-203 711.8 705 59.4
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 3.2e-202 709.1 706 60.3
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 7.0e-202 708.0 709 60.1
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 6.0e-201 704.9 706 60.1
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 6.0e-201 704.9 706 60.5
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 7.8e-201 704.5 709 59.4
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 4.3e-199 698.7 709 59.4
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 4.3e-199 698.7 706 59.8
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 6.2e-198 694.9 709 58.5
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.6e-196 689.5 709 59.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 9.8e-196 687.6 709 59.2
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 8.3e-195 684.5 706 59.1
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 7.8e-193 677.9 707 58.7
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 4.7e-190 668.7 709 57.5
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 3.0e-160 569.7 571 59.9
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 8.2e-150 535.0 718 48.1
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.9e-139 500.0 726 44.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 9.1e-133 478.4 729 44.7
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.3e-131 474.6 792 40.0
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.2e-131 473.8 728 44.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.1e-130 471.5 726 42.7
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.1e-130 471.5 732 43.4
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.1e-129 467.2 728 43.0
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.8e-125 454.1 729 40.5
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 5.9e-124 449.1 719 40.9
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 5.9e-124 449.1 717 40.9
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.5e-122 444.5 724 40.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.9e-122 444.1 729 41.0
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.9e-122 444.1 732 41.5
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.2e-122 443.4 782 40.4
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 9.4e-122 441.8 731 40.1
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.1e-121 440.7 728 42.2
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.2e-120 436.0 729 42.0
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 6.7e-120 435.6 728 42.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-119 434.9 716 40.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.4e-119 433.0 751 41.1
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.4e-119 433.0 731 41.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 2.8e-118 430.3 725 41.2
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.2e-116 424.9 739 39.6
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.6e-116 423.7 727 40.9
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 3.5e-116 423.3 732 40.0
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 7.7e-116 422.2 730 39.2
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.7e-115 421.0 731 41.0
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.2e-115 420.6 727 40.4
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.9e-115 420.2 732 40.7
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.8e-115 419.9 732 39.6
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 6.5e-115 419.1 731 40.6
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.9e-114 417.5 725 41.8
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.5e-114 416.0 727 40.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 5.5e-114 416.0 731 40.8
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.0e-112 411.8 723 39.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.0e-111 407.5 734 38.7
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 5.7e-111 406.0 729 40.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 9.8e-111 405.2 714 38.1
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.7e-110 403.3 740 38.5
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.8e-110 402.9 716 38.5
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 6.3e-110 402.5 726 40.1
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.3e-110 402.5 728 38.6
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 8.3e-110 402.1 734 38.7
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.7e-108 395.6 736 37.5
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.3e-107 394.8 732 37.7
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.7e-107 394.4 729 38.7
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.7e-107 394.4 724 37.4
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.9e-107 393.7 730 38.8
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.9e-107 393.7 712 37.6
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.8e-107 393.3 724 37.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.8e-107 393.3 718 40.0
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 6.5e-107 392.5 726 38.4
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-106 391.7 729 39.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.9e-106 391.0 727 38.1
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 9.4e-106 388.7 721 36.9
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.1e-105 387.5 721 39.5
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.7e-105 387.1 736 37.5
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.6e-105 386.7 715 37.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 3.4e-103 380.2 693 38.5
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 5.7e-103 379.4 767 36.2
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.7e-102 377.9 719 38.7
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.4e-101 374.8 731 38.3
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.8e-101 374.4 723 36.9
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.4e-101 374.0 728 36.4
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.2e-100 371.7 721 37.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.5e-100 369.8 727 36.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 7.7e-100 369.0 735 37.1
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.0e-99 368.6 733 36.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.3e-99 367.5 725 36.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 3.8e-99 366.7 712 37.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.5e-98 364.8 550 42.4
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.5e-98 364.8 754 36.1
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.9e-98 364.4 730 37.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.5e-98 364.0 701 37.2
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 7.3e-98 362.5 717 36.4
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.2e-97 361.7 728 36.7
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.2e-97 361.7 725 36.3
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 3.6e-97 360.1 639 39.6
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 6.1e-97 359.4 757 35.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 8.3e-94 349.0 656 38.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.4e-93 348.2 707 37.3
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.2e-93 347.1 724 34.4
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.6e-92 344.7 727 36.5
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.8e-92 342.4 733 34.2
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 7.8e-92 342.4 649 37.0
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.0e-87 327.8 704 34.5
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 4.4e-87 326.6 660 37.3
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.7e-81 306.6 711 34.3
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.8e-76 289.3 530 38.3
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.6e-75 286.2 539 40.1
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 8.1e-73 279.3 490 41.6
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.4e-69 266.5 532 36.1
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.3e-66 257.3 538 37.5
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 6.4e-62 243.0 522 33.5
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.4e-61 241.1 651 30.9
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-60 238.4 541 36.0
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.5e-58 231.1 472 36.2
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.4e-55 220.7 435 37.0
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.0e-52 209.9 482 34.0
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.1e-50 205.7 727 27.1
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 6.2e-49 199.9 361 39.3
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-48 198.0 498 32.9
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.4e-47 194.1 285 43.5
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.4e-45 188.0 135 74.8
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 2.1e-44 184.9 423 33.6
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.2e-41 173.3 287 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.4e-40 171.4 555 28.3
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.5e-39 168.7 275 40.7
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.4e-39 167.5 254 40.6
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.8e-38 164.1 724 26.8
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.9e-37 161.8 182 52.2
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.2e-36 159.1 529 28.4
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.5e-34 151.4 186 46.8
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 7.6e-31 139.8 551 27.2
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 4.2e-29 134.0 138 55.1
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 6.7e-27 126.7 173 46.2
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.3e-24 117.1 189 39.2
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.2e-23 115.9 134 47.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.5e-23 115.5 196 37.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-19 102.4 124 41.9
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.1e-18 99.4 140 42.9
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 5.7e-18 97.1 76 65.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.3e-17 95.9 211 37.4
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 8.2e-17 93.2 273 29.7
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.4e-16 92.4 103 46.6
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-16 91.3 117 45.3
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 4.1e-16 90.9 131 39.7
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-14 85.9 99 51.5
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 8.5e-14 83.2 122 41.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.2e-13 81.3 242 30.6
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 5.5e-13 80.5 304 25.0
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.7e-12 78.2 125 40.0
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.7e-12 78.2 151 35.1
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.7e-12 77.4 71 59.2
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.1e-12 77.0 94 50.0
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-10 71.6 104 41.3
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-10 71.6 104 41.3
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-10 71.2 104 39.4
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.3e-10 71.2 85 42.4
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.7e-10 70.5 101 43.6
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-08 66.2 65 56.9
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.1e-08 64.3 104 40.4
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.1e-08 64.3 65 55.4
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.1e-08 64.3 65 55.4
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.3e-08 63.9 104 40.4
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.3e-08 63.9 107 37.4
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.3e-08 63.9 107 37.4
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-07 62.8 65 53.8
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-07 62.4 65 55.4
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-07 62.4 65 55.4
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 2.0e-07 62.0 94 40.4
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-07 61.2 104 39.4
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 2.9e-06 58.2 70 40.0


User provided reference genes

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