Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G46100 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 3.6e-39 164.5 84 100.0
AL7G33510 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 2.3e-30 135.2 71 98.6
CARHR227210 Cardamine hirsuta HOM05D002138 ORTHO05D002106 4.1e-27 124.4 69 92.8
AT4G20380 Arabidopsis thaliana HOM05D002138 ORTHO05D002106 5.4e-27 124.0 71 94.4
Sp7g18750 Schrenkiella parvula HOM05D002138 ORTHO05D002106 2.0e-26 122.1 72 91.7
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 4.6e-26 120.9 76 86.8
Aa31LG6G2770 Aethionema arabicum HOM05D002138 ORTHO05D002106 1.0e-25 119.8 70 92.9
Thhalv10026533m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 1.7e-25 119.0 70 92.9
BraA03t14321Z Brassica rapa HOM05D002138 ORTHO05D002106 3.0e-25 118.2 71 88.7
Carub.0007s2078 Capsella rubella HOM05D002138 ORTHO05D002106 5.0e-25 117.5 71 90.1
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 1.1e-24 116.3 72 88.9
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 1.1e-24 116.3 72 88.9
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 1.1e-24 116.3 72 88.9
A01p12080 Brassica napus HOM05D002138 ORTHO05D002106 1.5e-24 115.9 72 88.9
BraA01t01151Z Brassica rapa HOM05D002138 ORTHO05D002106 1.5e-24 115.9 72 88.9
A03p52420 Brassica napus HOM05D002138 ORTHO05D002106 9.5e-24 113.2 71 87.3
C07p50880 Brassica napus HOM05D002138 ORTHO05D002106 1.2e-23 112.8 72 87.5
THA.LOC104812929 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 5.2e-22 107.5 69 84.1
TPR.G6267 Trifolium pratense HOM05D002138 ORTHO05D002106 1.5e-21 105.9 69 81.2
arahy.Tifrunner.gnm1.ann1.0BUM6B Arachis hypogaea HOM05D002138 ORTHO05D002106 2.0e-21 105.5 71 76.1
arahy.Tifrunner.gnm1.ann1.0IDF8B Arachis hypogaea HOM05D002138 ORTHO05D002106 2.0e-21 105.5 71 76.1
VMungo0251G0598 Vigna mungo HOM05D002138 ORTHO05D002106 2.0e-21 105.5 70 78.6
Lj4g0018656 Lotus japonicus HOM05D002138 ORTHO05D002106 4.4e-21 104.4 71 77.5
Ciclev10016959m.g Citrus clementina HOM05D002138 ORTHO05D002106 5.8e-21 104.0 72 77.8
CSS0019083 Camellia sinensis var. sinensis HOM05D002138 ORTHO05D002106 7.5e-21 103.6 71 76.1
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 3.7e-20 101.3 70 81.4
Ca_17809_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 3.7e-20 101.3 71 73.2
Glyma.08G129400 Glycine max HOM05D002138 ORTHO05D002106 3.7e-20 101.3 70 75.7
Glyma.U031408 Glycine max HOM05D002138 ORTHO05D002106 4.9e-20 100.9 70 74.3
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 6.4e-20 100.5 70 75.7
THA.LOC104812036 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 6.4e-20 100.5 71 78.9
QL05p063069 Quercus lobata HOM05D002138 ORTHO05D002106 8.3e-20 100.1 70 75.7
Thecc.06G005100 Theobroma cacao HOM05D002138 ORTHO05D002106 8.3e-20 100.1 72 79.2
BcaB03g11670 Brassica carinata HOM05D002138 ORTHO05D002106 1.1e-19 99.8 72 80.6
COL.COLO4_26865 Corchorus olitorius HOM05D002330 ORTHO05D002411 1.1e-19 99.8 72 79.2
Manes.03G069700 Manihot esculenta HOM05D002138 ORTHO05D002106 1.1e-19 99.8 72 76.4
Phvul.002G252000 Phaseolus vulgaris HOM05D002138 ORTHO05D002106 1.4e-19 99.4 71 74.6
Medtr8g089310 Medicago truncatula HOM05D002138 ORTHO05D002106 1.9e-19 99.0 68 76.5
Lsat_1_v5_gn_5_84081 Lactuca sativa HOM05D002138 ORTHO05D002106 4.1e-19 97.8 69 78.3
Thhalv10001047m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 7.1e-19 97.1 70 77.1
Glyma.09G083500 Glycine max HOM05D002138 ORTHO05D002106 9.2e-19 96.7 71 71.8
Manes.16G062400 Manihot esculenta HOM05D002138 ORTHO05D002106 1.2e-18 96.3 72 77.8
Duzib235G1231 Durio zibethinus HOM05D002330 ORTHO05D002411 1.6e-18 95.9 72 75.0
Potri.001G442400 Populus trichocarpa HOM05D002138 ORTHO05D002106 2.1e-18 95.5 70 77.1
CANSAT35G1191 Cannabis sativa HOM05D002138 ORTHO05D002106 3.5e-18 94.7 72 73.6
Glyma.15G192000 Glycine max HOM05D002138 ORTHO05D002106 3.5e-18 94.7 73 71.2
RhsimUnG0090000 Rhododendron simsii HOM05D002138 ORTHO05D002106 3.5e-18 94.7 71 73.2
Sabra16G0300900 Salix brachista HOM05D002138 ORTHO05D002106 3.5e-18 94.7 73 74.0
Atru.chr10.656 Acer truncatum HOM05D002330 ORTHO05D002411 4.6e-18 94.4 71 74.6
BolC3t20573H Brassica oleracea HOM05D002138 ORTHO05D002106 4.6e-18 94.4 73 80.8
C03p82900 Brassica napus HOM05D002138 ORTHO05D002106 6.0e-18 94.0 72 79.2
BcaC01g00667 Brassica carinata HOM05D002138 ORTHO05D002106 7.8e-18 93.6 77 77.9
TAR626G1147 Trochodendron aralioides HOM05D002138 ORTHO05D002106 1.0e-17 93.2 70 71.4
Aqoxy1G01592 Aquilegia oxysepala HOM05D002138 ORTHO05D002106 1.3e-17 92.8 71 69.0
Cc06_g12860 Coffea canephora HOM05D002138 ORTHO05D002106 1.7e-17 92.4 69 72.5
MSTRG.6246 Avicennia marina HOM05D002138 ORTHO05D002106 3.0e-17 91.7 72 68.1
Lalb_Chr12g0204321 Lupinus albus HOM05D002138 ORTHO05D002106 3.0e-17 91.7 71 67.6
Rhsim02G0167700 Rhododendron simsii HOM05D002138 ORTHO05D002106 3.0e-17 91.7 71 71.8
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 3.0e-17 91.7 71 71.8
Psat7g060840 Pisum sativum HOM05D002138 ORTHO05D002106 3.9e-17 91.3 62 80.6
Migut.J01511 Erythranthe guttata HOM05D002138 ORTHO05D002106 5.1e-17 90.9 72 68.1
Lalb_Chr08g0233161 Lupinus albus HOM05D002138 ORTHO05D002106 5.1e-17 90.9 69 72.5
Sp2g09350 Schrenkiella parvula HOM05D002138 ORTHO05D002106 5.1e-17 90.9 71 73.2
Prupe.4G102000 Prunus persica HOM05D002138 ORTHO05D002106 6.6e-17 90.5 71 73.2
Sabra16G0299000 Salix brachista HOM05D002138 ORTHO05D002106 8.6e-17 90.1 71 73.2
TAR629G1185 Trochodendron aralioides HOM05D002138 ORTHO05D002106 8.6e-17 90.1 71 67.6
CiPaw.09G149400 Carya illinoinensis HOM05D002138 ORTHO05D002106 1.5e-16 89.4 69 72.5
TWI63G1074 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 1.5e-16 89.4 69 69.6
MD05G1263500 Malus domestica HOM05D002138 ORTHO05D002106 1.9e-16 89.0 67 71.6
Gohir.D10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.5e-16 88.6 72 70.8
MD10G1241200 Malus domestica HOM05D002138 ORTHO05D002106 2.5e-16 88.6 71 71.8
Dinv11971 Davidia involucrata HOM05D002138 ORTHO05D002106 3.3e-16 88.2 71 69.0
ATR1098G036 Amborella trichopoda HOM05D002138 ORTHO05D002106 4.3e-16 87.8 72 68.1
Gohir.A06G202300 Gossypium hirsutum HOM05D002138 ORTHO05D002106 4.3e-16 87.8 72 69.4
Gohir.A10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 4.3e-16 87.8 72 70.8
Gohir.D06G219400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 4.3e-16 87.8 72 69.4
Gorai.010G246900 Gossypium raimondii HOM05D002138 ORTHO05D002106 4.3e-16 87.8 72 69.4
Lalb_Chr23g0276031 Lupinus albus HOM05D002138 ORTHO05D002106 5.6e-16 87.4 71 66.2
Oeu009081.3 Olea europaea HOM05D002138 ORTHO05D002106 5.6e-16 87.4 83 60.2
Potri.011G154800 Populus trichocarpa HOM05D002138 ORTHO05D002106 5.6e-16 87.4 71 71.8
SGA_v2.0_scaffold69G23248 Striga asiatica HOM05D002138 ORTHO05D002106 7.3e-16 87.0 72 65.3
A08p14830 Brassica napus HOM05D002138 ORTHO05D002106 1.6e-15 85.9 72 72.2
BraA08t33467Z Brassica rapa HOM05D002138 ORTHO05D002106 1.6e-15 85.9 72 72.2
CiPaw.10G111300 Carya illinoinensis HOM05D002138 ORTHO05D002106 1.6e-15 85.9 69 71.0
Sed0010270 Sechium edule HOM05D002138 ORTHO05D002106 1.6e-15 85.9 71 69.0
Gorai.011G005300 Gossypium raimondii HOM05D002138 ORTHO05D002106 2.8e-15 85.1 72 68.1
Nn7g37741 Nelumbo nucifera HOM05D002138 ORTHO05D002106 2.8e-15 85.1 71 64.8
ClCG01G025450 Citrullus lanatus HOM05D002138 ORTHO05D002106 6.2e-15 84.0 70 70.0
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 6.2e-15 84.0 70 70.0
CsaV3_6G052700 Cucumis sativus L. HOM05D002138 ORTHO05D002106 6.2e-15 84.0 70 70.0
vmacro10995 Vaccinium macrocarpon HOM05D002138 ORTHO05D002106 8.1e-15 83.6 68 75.0
Eucgr.A00512 Eucalyptus grandis HOM05D002138 ORTHO05D002106 1.8e-14 82.4 72 70.8
Sed0010165 Sechium edule HOM05D002330 ORTHO05D002411 1.8e-14 82.4 69 65.2
TPR.G625 Trifolium pratense HOM05D002138 ORTHO05D002106 1.8e-14 82.4 75 61.3
Haze_05972 Corylus avellana HOM05D002138 ORTHO05D002106 3.1e-14 81.6 71 67.6
Aa31LG9G8650 Aethionema arabicum HOM05D002138 ORTHO05D002106 5.2e-14 80.9 72 66.7
Ca_02382_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 5.2e-14 80.9 68 66.2
FAN16G0729 Fragaria x ananassa HOM05D000257 ORTHO05D009178 6.8e-14 80.5 72 69.4
PGR083G1218 Punica granatum HOM05D002138 ORTHO05D002106 6.8e-14 80.5 68 69.1
GSVIVG01037958001 Vitis vinifera HOM05D002138 ORTHO05D002106 8.9e-14 80.1 71 64.8
MBI18_g28207_MAGBIO Magnolia biondii HOM05D002138 ORTHO05D002106 1.2e-13 79.7 71 66.2
Psat1g019560 Pisum sativum HOM05D002138 ORTHO05D002106 1.5e-13 79.3 69 66.7
HanXRQChr03g0084531 Helianthus annuus HOM05D002138 ORTHO05D002106 3.4e-13 78.2 69 65.2
BcaC06g34539 Brassica carinata HOM05D002138 ORTHO05D002106 4.4e-13 77.8 72 66.7
C07p27430 Brassica napus HOM05D002138 ORTHO05D002106 4.4e-13 77.8 72 66.7
BolC7t43273H Brassica oleracea HOM05D002138 ORTHO05D002106 4.4e-13 77.8 72 66.7
Gohir.D05G111800 Gossypium hirsutum HOM05D002138 ORTHO05D002106 4.4e-13 77.8 63 74.6
Gorai.009G116000 Gossypium raimondii HOM05D002138 ORTHO05D002106 4.4e-13 77.8 63 74.6
EL10Ac8g19641 Beta vulgaris HOM05D002138 ORTHO05D002106 5.8e-13 77.4 71 64.8
RcHm_v2.0_Chr5g0018361 Rosa chinensis HOM05D002138 ORTHO05D002106 5.8e-13 77.4 68 67.6
unitig_60.g25492 Utricularia gibba HOM05D002138 ORTHO05D002106 7.6e-13 77.0 66 59.1
MSTRG.16312 Avicennia marina HOM05D002138 ORTHO05D002106 1.3e-12 76.3 67 61.2
Medtr2g047838 Medicago truncatula HOM05D002138 ORTHO05D002106 1.3e-12 76.3 70 62.9
FAN21G3756 Fragaria x ananassa HOM05D002138 ORTHO05D002106 2.9e-12 75.1 70 65.7
Sopen02g018840 Solanum pennellii HOM05D002138 ORTHO05D002106 4.9e-12 74.3 65 67.7
Oeu052706.2 Olea europaea HOM05D002138 ORTHO05D002106 6.4e-12 73.9 61 67.2
CDE02G0016 Ceratophyllum demersum HOM05D002138 ORTHO05D002106 8.4e-12 73.6 74 62.2
SalBow7G0802 Salvia bowleyana HOM05D002138 ORTHO05D002106 8.4e-12 73.6 69 60.9
Oeu063150.1 Olea europaea HOM05D002138 ORTHO05D002106 3.2e-11 71.6 69 58.0
Lsat_1_v5_gn_7_55201 Lactuca sativa HOM05D001519 ORTHO05D001403 4.1e-11 71.2 57 70.2
Solyc02g069720.3 Solanum lycopersicum HOM05D002138 ORTHO05D002106 4.1e-11 71.2 65 66.2
PGSC0003DMG400021196 Solanum tuberosum HOM05D002138 ORTHO05D002106 4.1e-11 71.2 65 66.2
Lj2C338T15 Lonicera japonica HOM05D002138 ORTHO05D002106 7.1e-11 70.5 76 56.6
Lalb_Chr07g0185671 Lupinus albus HOM05D002138 ORTHO05D002106 9.2e-11 70.1 65 58.5
Nitab4.5_0006863g0020 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.2e-10 69.7 65 64.6
Hund21537 Selenicereus undatus HOM05D002138 ORTHO05D002106 1.6e-10 69.3 77 55.8
MSTRG.14808 Avicennia marina HOM05D002138 ORTHO05D002106 2.7e-10 68.6 67 58.2
TWI15G0245 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 4.6e-10 67.8 62 61.3
SMO358G0140 Selaginella moellendorffii HOM05D002138 ORTHO05D002106 6.0e-10 67.4 73 53.4
Lsat_1_v5_gn_8_68441 Lactuca sativa HOM05D002138 ORTHO05D002106 7.8e-10 67.0 68 58.8
PSO541G1019 Papaver somniferum HOM05D002138 ORTHO05D002106 3.9e-09 64.7 65 66.2
Sopen02g009420 Solanum pennellii HOM05D002138 ORTHO05D000004 3.9e-09 64.7 59 61.0
HPP92_016666 Vanilla planifolia HOM05D002138 ORTHO05D002106 6.6e-09 63.9 71 60.6
MSTRG.7564 Avicennia marina HOM05D002138 ORTHO05D002106 8.7e-09 63.5 65 55.4
Ah.14g086340 Amaranthus hybridus HOM05D002227 ORTHO05D002337 1.1e-08 63.2 64 62.5
AUR62002695 Chenopodium quinoa HOM05D002138 ORTHO05D002106 1.1e-08 63.2 76 56.6
AUR62030152 Chenopodium quinoa HOM05D002138 ORTHO05D002106 1.1e-08 63.2 55 70.9
Gohir.A05G111400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.5e-08 62.8 69 63.8
Pp3c11_12260 Physcomitrium patens HOM05D002138 ORTHO05D002106 1.9e-08 62.4 74 54.1
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.9e-08 62.4 66 60.6
Oeu060328.1 Olea europaea HOM05D002138 ORTHO05D002106 3.3e-08 61.6 61 62.3
HPP92_015683 Vanilla planifolia HOM05D002138 ORTHO05D002106 3.3e-08 61.6 72 54.2
Sabra11G0144900 Salix brachista HOM05D002330 ORTHO05D002411 4.3e-08 61.2 51 72.5
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 5.6e-08 60.8 56 58.9
PSO675G6382 Papaver somniferum HOM05D002138 ORTHO05D002106 5.6e-08 60.8 65 64.6
AagrBONN_evm.TU.Sc2ySwM_362.175 Anthoceros agrestis HOM05D002138 ORTHO05D002106 7.3e-08 60.5 72 51.4
Os12g0611000 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 7.3e-08 60.5 70 60.0
Oeu000495.1 Olea europaea HOM05D002138 ORTHO05D002106 1.6e-07 59.3 66 50.0
SalBow8G2330 Salvia bowleyana HOM05D002138 ORTHO05D002106 2.1e-07 58.9 63 58.7
SalBow8G3701 Salvia bowleyana HOM05D002138 ORTHO05D002106 2.1e-07 58.9 63 58.7
HPP92_011023 Vanilla planifolia HOM05D002138 ORTHO05D002106 2.1e-07 58.9 70 52.9
ECA234G3665 Erigeron canadensis HOM05D002895 ORTHO05D003286 8.1e-07 57.0 37 81.1
Lj6g0027782 Lotus japonicus HOM05D002138 ORTHO05D002106 8.1e-07 57.0 73 50.7
Pp3c7_12740 Physcomitrium patens HOM05D002138 ORTHO05D002106 1.4e-06 56.2 62 54.8
CAN.G215.16 Capsicum annuum HOM05D002138 ORTHO05D002106 4.0e-06 54.7 57 56.1
Sc22g0001600 Simmondsia chinensis HOM05D002138 ORTHO05D002106 4.0e-06 54.7 57 56.1
SGA_v2.0_scaffold298G47631 Striga asiatica HOM05D002138 ORTHO05D002106 5.2e-06 54.3 48 66.7
Migut.M01935 Erythranthe guttata HOM05D002138 ORTHO05D002106 6.9e-06 53.9 67 49.3


User provided reference genes

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