Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 2.2e-163 578.9 299 100.0
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 3.7e-139 498.4 299 86.0
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.9e-138 496.1 301 87.0
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 5.8e-116 421.4 276 82.6
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 7.6e-116 421.0 275 82.5
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 9.9e-116 420.6 275 82.5
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 3.8e-115 418.7 274 81.8
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 5.4e-114 414.8 275 81.8
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 7.1e-114 414.5 275 81.8
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 3.0e-112 409.1 278 80.2
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 2.8e-110 402.5 271 81.2
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.1e-109 400.6 276 80.1
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 2.6e-108 396.0 275 79.6
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 7.1e-106 387.9 206 96.1
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 5.6e-103 378.3 220 89.1
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.7e-102 375.6 257 79.0
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.0e-99 367.5 240 77.1
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.3e-96 357.1 231 80.1
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 3.7e-94 349.0 274 70.8
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 7.9e-89 331.3 214 79.9
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.4e-88 330.5 214 79.4
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 3.9e-88 328.9 218 78.0
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 5.1e-88 328.6 218 78.0
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 3.3e-87 325.9 275 65.8
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 7.4e-87 324.7 224 75.4
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.3e-86 323.9 248 72.6
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 2.2e-86 323.2 214 77.6
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 2.8e-86 322.8 214 78.0
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.8e-86 322.8 209 78.5
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.8e-86 322.8 213 77.5
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 6.3e-86 321.6 259 68.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 8.2e-86 321.2 258 67.4
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.4e-85 320.5 205 79.0
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.4e-85 320.5 286 62.2
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.4e-85 320.5 267 65.2
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.4e-85 319.7 230 72.6
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 2.4e-85 319.7 267 65.2
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 5.3e-85 318.5 187 82.4
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 5.3e-85 318.5 214 76.6
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 6.9e-85 318.2 251 68.5
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 6.9e-85 318.2 210 76.2
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 9.1e-85 317.8 213 75.6
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 9.1e-85 317.8 257 68.1
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.5e-84 317.0 267 64.8
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 2.6e-84 316.2 208 76.0
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 2.6e-84 316.2 204 77.5
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.6e-84 316.2 294 59.9
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 3.4e-84 315.8 257 65.8
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 4.5e-84 315.5 294 59.2
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 4.5e-84 315.5 249 69.9
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 5.9e-84 315.1 237 70.0
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 5.9e-84 315.1 294 60.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 5.9e-84 315.1 227 72.7
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 5.9e-84 315.1 212 75.5
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 5.9e-84 315.1 204 78.4
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 7.7e-84 314.7 228 71.1
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.3e-83 313.9 227 72.2
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.7e-83 313.5 225 72.0
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.7e-83 313.5 249 69.5
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 2.2e-83 313.2 202 78.2
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.2e-83 313.2 309 58.3
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 2.2e-83 313.2 214 75.2
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.2e-83 313.2 220 71.8
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.9e-83 312.8 213 74.6
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.8e-83 312.4 214 74.3
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 6.5e-83 311.6 204 77.5
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 6.5e-83 311.6 249 66.3
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 6.5e-83 311.6 214 74.3
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.1e-82 310.8 213 73.7
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 1.1e-82 310.8 222 72.1
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.4e-82 310.5 212 74.1
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.9e-82 310.1 273 63.4
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 2.5e-82 309.7 270 63.3
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 2.5e-82 309.7 209 75.1
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.5e-82 309.7 214 73.8
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 2.5e-82 309.7 214 73.8
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 4.2e-82 308.9 242 67.4
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 4.2e-82 308.9 254 65.7
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 5.5e-82 308.5 215 73.5
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 5.5e-82 308.5 205 75.1
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 5.5e-82 308.5 214 74.3
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 9.4e-82 307.8 234 67.9
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 9.4e-82 307.8 214 72.4
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.6e-81 307.0 250 64.4
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.6e-81 307.0 274 61.7
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.6e-81 307.0 205 74.6
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.6e-81 307.0 253 65.6
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.1e-81 306.6 213 72.3
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 4.7e-81 305.4 250 64.0
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 4.7e-81 305.4 208 71.6
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 3.9e-80 302.4 179 81.6
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.1e-80 302.0 218 73.4
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 5.1e-80 302.0 268 60.4
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 6.7e-80 301.6 249 65.5
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 8.8e-80 301.2 267 61.0
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 8.8e-80 301.2 210 71.0
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.5e-79 300.4 221 67.0
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.5e-79 300.4 209 73.2
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.5e-79 300.4 179 80.4
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 2.6e-79 299.7 209 70.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 9.7e-79 297.7 209 71.3
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.3e-78 297.4 247 66.4
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 8.2e-78 294.7 286 59.1
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.1e-77 294.3 253 63.2
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.6e-76 289.7 225 64.4
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 8.0e-73 278.1 179 72.1
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 8.8e-72 274.6 224 64.7
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 2.0e-71 273.5 184 68.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 3.1e-69 266.2 208 63.5
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 1.9e-66 256.9 204 67.2
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 9.1e-61 238.0 179 61.5
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 3.0e-56 223.0 182 57.7
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 6.8e-48 195.3 132 74.2
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 8.3e-46 188.3 149 63.1
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.0e-44 183.7 111 79.3
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.9e-42 177.2 216 44.0
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 9.2e-37 158.3 250 39.2
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 6.8e-24 115.5 194 34.5
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.9e-19 99.8 75 70.7
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.6e-17 94.4 74 66.2
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.8e-16 90.9 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 5.4e-13 79.3 61 63.9
AL7G39950 Arabidopsis lyrata HOM05D001154 ORTHO05D001175 2.1e-12 77.4 50 86.0
Carub.0007s2628 Capsella rubella HOM05D001154 ORTHO05D001175 2.7e-12 77.0 51 84.3
AT4G15560 Arabidopsis thaliana HOM05D001154 ORTHO05D001175 1.7e-11 74.3 50 82.0
Sp7g13820 Schrenkiella parvula HOM05D001154 ORTHO05D001175 3.9e-11 73.2 46 82.6
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 6.6e-11 72.4 243 27.2
CARHR289970 Cardamine hirsuta HOM05D001154 ORTHO05D001175 5.6e-10 69.3 76 57.9
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.3e-09 68.2 47 76.6
A01p21980 Brassica napus HOM05D001154 ORTHO05D001175 1.3e-09 68.2 47 76.6
C01p27370 Brassica napus HOM05D001154 ORTHO05D001175 1.3e-09 68.2 47 76.6
BraA01t02104Z Brassica rapa HOM05D001154 ORTHO05D001175 1.3e-09 68.2 47 76.6
BolC1t02677H Brassica oleracea HOM05D001154 ORTHO05D001175 4.8e-09 66.2 47 74.5
Thhalv10024542m.g Eutrema salsugineum HOM05D001154 ORTHO05D001175 6.2e-09 65.9 46 76.1
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 4.0e-08 63.2 205 25.4
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 6.9e-08 62.4 210 24.8
BcaNung00262 Brassica carinata HOM05D001154 ORTHO05D001175 9.0e-08 62.0 47 68.1
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 2.6e-07 60.5 209 26.3
BcaC06g32943 Brassica carinata HOM05D001154 ORTHO05D001175 3.4e-07 60.1 47 74.5
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 4.4e-07 59.7 212 24.5
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 5.8e-07 59.3 249 24.9
HanXRQChr07g0200961 Helianthus annuus HOM05D002933 ORTHO05D009221 5.8e-07 59.3 219 25.6
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 5.8e-07 59.3 205 24.4
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 7.6e-07 58.9 210 25.2
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 9.9e-07 58.5 233 24.9
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 9.9e-07 58.5 214 26.6
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 1.3e-06 58.2 237 22.8
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 1.3e-06 58.2 251 26.7
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 1.7e-06 57.8 210 23.8
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.7e-06 57.8 216 26.4
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 1.7e-06 57.8 259 24.7
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 4.9e-06 56.2 180 27.2
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 4.9e-06 56.2 210 25.2
Gohir.D04G061800 Gossypium hirsutum HOM05D002933 ORTHO05D009221 4.9e-06 56.2 243 25.9
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 4.9e-06 56.2 223 24.7
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 4.9e-06 56.2 209 24.4
FAN06G0750 Fragaria x ananassa HOM05D002933 ORTHO05D009221 6.4e-06 55.8 219 24.2
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 6.4e-06 55.8 214 25.7


User provided reference genes

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