Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 0.0e+00 1207.2 678 100.0
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 0.0e+00 1090.1 679 91.5
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 4.2e-295 1017.7 681 85.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 8.7e-293 1010.0 679 85.6
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.5e-292 1009.2 681 83.3
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.4e-287 991.9 678 82.9
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 2.5e-284 981.9 679 83.8
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.3e-277 959.5 680 81.3
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.8e-277 959.1 684 80.3
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.1e-276 956.4 679 80.1
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.1e-275 952.2 679 82.0
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.8e-274 949.1 679 79.5
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-273 945.7 681 79.9
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 8.4e-272 940.3 681 79.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 5.5e-271 937.6 681 80.2
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 6.3e-267 924.1 686 79.2
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-248 863.2 690 71.4
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 5.7e-236 821.2 688 73.5
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.2e-220 770.4 690 68.0
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 5.7e-220 768.1 555 80.5
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.9e-211 739.2 708 63.4
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.9e-211 738.4 709 61.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.9e-191 673.3 698 62.0
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 7.1e-178 628.2 697 58.8
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.2e-177 627.5 699 59.4
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.7e-177 626.3 699 59.2
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.5e-177 625.9 700 57.6
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.3e-176 624.0 700 52.3
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-176 623.6 698 58.7
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 8.7e-176 621.3 699 58.8
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 7.4e-175 618.2 698 58.2
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.1e-173 612.8 698 57.9
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.8e-172 608.6 698 57.6
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 7.9e-169 598.2 698 57.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.0e-168 597.8 704 57.0
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.6e-166 590.5 697 54.8
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.1e-166 590.1 698 58.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.8e-165 587.0 702 56.7
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 4.9e-163 578.9 694 54.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 8.4e-163 578.2 697 54.1
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 5.1e-160 568.9 702 54.3
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.3e-159 565.8 709 53.9
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 9.6e-159 564.7 700 55.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.3e-157 558.9 709 53.6
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.6e-156 555.1 729 52.1
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.3e-155 554.3 706 52.1
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-154 551.2 706 53.7
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.9e-154 550.4 706 54.7
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.1e-153 547.0 700 55.1
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 7.9e-153 545.0 704 54.0
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.3e-152 544.3 707 50.5
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.8e-152 543.9 703 46.5
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.3e-152 543.5 699 53.2
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.0e-152 543.1 709 52.2
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 6.7e-152 542.0 712 52.7
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.7e-152 541.6 760 46.4
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.1e-151 541.2 709 52.2
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-151 541.2 706 52.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.5e-151 540.0 709 53.6
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.3e-151 539.3 709 53.0
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 9.7e-151 538.1 705 48.9
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.7e-150 536.2 717 50.3
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-149 534.3 701 53.9
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 5.3e-149 532.3 701 53.9
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.7e-147 527.3 705 52.1
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 6.5e-147 525.4 703 48.4
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 8.5e-147 525.0 699 52.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 8.5e-147 525.0 706 51.8
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.1e-145 520.4 695 52.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 7.9e-145 518.5 700 51.3
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.3e-144 516.9 742 48.8
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.1e-143 514.6 772 40.5
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.0e-143 513.8 697 52.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 4.4e-143 512.7 703 50.9
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 7.4e-143 511.9 702 51.7
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.2e-142 510.4 705 49.6
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.8e-142 510.0 704 52.1
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 8.2e-142 508.4 698 50.6
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 8.2e-142 508.4 700 50.3
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.1e-141 506.5 703 51.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.2e-140 504.6 670 53.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.6e-140 503.4 707 53.3
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.9e-139 500.0 731 49.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.5e-139 498.8 712 50.4
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.4e-138 497.7 703 49.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.4e-138 497.7 694 51.9
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.5e-138 496.9 702 51.3
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.2e-137 494.6 696 51.4
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 7.4e-135 485.3 704 50.6
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.3e-134 484.6 727 49.7
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.8e-133 480.7 631 55.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 5.3e-133 479.2 703 50.1
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.6e-132 476.9 646 54.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 7.7e-132 475.3 631 55.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.8e-131 473.0 715 49.8
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 8.5e-131 471.9 706 50.7
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.4e-128 464.5 703 44.1
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.7e-126 457.6 697 50.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 9.1e-125 451.8 706 48.2
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.6e-124 451.1 696 49.3
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.7e-124 448.7 713 47.8
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.2e-116 424.9 706 39.2
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.7e-116 423.7 467 62.5
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.7e-116 423.7 704 45.3
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 6.5e-115 419.1 694 39.6
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.8e-112 409.1 536 43.8
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.2e-111 408.3 636 51.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.7e-107 394.4 691 38.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.5e-106 390.6 697 37.3
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 9.5e-106 388.7 702 37.9
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.4e-102 375.9 519 53.9
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.2e-101 373.6 688 38.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.1e-96 357.1 625 47.7
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.2e-93 345.5 526 42.4
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-90 337.4 513 51.1
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.4e-88 331.6 523 50.1
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 8.1e-81 305.8 527 36.8
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 3.8e-78 297.0 456 45.2
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 5.4e-77 293.1 524 38.2
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 9.6e-74 282.3 703 40.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 7.3e-66 256.1 419 51.6
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 3.6e-65 253.8 267 65.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.2e-65 253.1 254 74.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.4e-58 229.6 426 35.7
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.7e-57 227.3 315 46.0
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 8.1e-57 226.1 348 42.5
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 8.4e-54 216.1 124 84.7
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-52 211.1 472 32.6
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 4.6e-52 210.3 131 77.9
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.1e-50 205.7 250 50.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 2.1e-49 201.4 122 80.3
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.2e-49 199.5 464 33.6
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 2.7e-44 184.5 700 30.0
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 7.4e-42 176.4 196 51.0
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 6.9e-40 169.9 271 42.4
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.4e-37 162.2 134 64.9
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.6e-36 158.7 548 27.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 9.7e-34 149.4 118 67.8
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-32 144.8 121 62.0
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.0e-31 141.7 188 45.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.0e-30 139.4 122 55.7
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.7e-28 130.6 152 53.9
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 3.9e-27 127.5 506 27.3
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 8.2e-25 119.8 109 56.0
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.4e-24 119.0 122 48.4
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 5.9e-23 113.6 141 50.4
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-22 112.1 98 61.2
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.4e-21 109.0 195 40.0
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.6e-20 104.4 94 60.6
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.1e-18 99.4 70 68.6
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 2.2e-17 95.1 75 62.7
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 9.1e-16 89.7 122 38.5
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.6e-15 89.0 130 44.6
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-15 88.6 103 42.7
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 2.0e-15 88.6 247 28.7
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-15 87.8 106 41.5
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-15 87.8 106 41.5
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.5e-14 83.2 106 39.6
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.1e-13 82.8 286 27.3
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-13 80.5 106 38.7
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.7e-12 78.2 152 34.2
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-11 75.1 106 38.7
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-11 75.1 106 37.7
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.8e-11 73.2 106 38.7
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-10 72.4 65 63.1
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 2.0e-10 72.0 123 33.3
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.7e-10 70.5 65 61.5
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.7e-10 70.5 65 61.5
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.7e-10 70.5 65 61.5
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.7e-10 70.5 65 61.5
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-09 68.9 65 60.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.2e-09 68.6 50 58.0
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.8e-09 68.2 256 24.6
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 4.1e-08 64.3 61 47.5
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.6e-07 62.4 29 89.7
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.6e-07 62.4 72 44.4
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.7e-06 58.9 60 53.3


User provided reference genes

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