Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 4982.2 2539 100.0
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 4542.6 2578 91.3
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 3805.4 2618 76.8
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 3701.0 2555 76.0
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 3646.7 2391 79.5
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 3520.7 2577 73.3
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 3504.9 2581 72.9
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 3501.4 2612 72.2
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 3484.5 2616 71.9
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 3472.6 2180 83.4
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3454.1 2536 73.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3350.8 2526 71.7
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 3261.5 2577 70.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 3204.8 2526 70.0
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 3031.1 2569 63.3
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2883.2 2179 72.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 2491.5 2451 59.0
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2242.2 2614 49.8
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2159.0 2613 47.8
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2126.7 2623 47.5
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2095.9 2627 46.9
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2063.1 2618 46.2
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2051.6 2620 46.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2044.6 2631 45.6
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2039.6 2621 45.7
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2037.7 2613 46.0
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2013.8 2600 45.7
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2001.5 2590 45.9
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1999.2 2611 45.2
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1997.6 2595 45.5
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1963.0 2673 44.8
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1952.9 2628 44.4
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1943.7 2648 44.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1933.3 2604 44.1
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1911.0 2246 48.5
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1907.9 2595 44.0
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1882.8 2690 43.2
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1870.5 2595 42.9
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1840.5 2521 44.3
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1836.2 2613 43.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1817.4 1214 78.4
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1813.9 2674 42.1
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1805.0 2587 41.9
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1800.0 2742 42.0
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1780.8 2616 41.1
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1763.0 2618 41.7
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1730.7 2591 41.0
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1728.0 2598 41.4
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1722.6 2604 42.6
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1719.9 2628 40.2
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1708.0 2572 41.1
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1682.9 2607 39.9
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1677.9 2590 40.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1672.1 2615 39.9
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1669.1 2570 40.5
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1661.4 2608 40.0
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1660.6 2600 40.8
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1656.7 2589 40.6
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1656.3 2620 40.6
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1649.8 2604 40.0
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1649.8 2594 40.3
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1647.5 2609 40.4
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1645.2 2582 40.4
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1641.3 2661 39.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1639.0 2588 40.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1636.7 2622 39.6
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1629.0 2392 41.8
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1628.2 2579 40.4
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1615.5 2647 39.4
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1607.4 2586 40.8
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1581.6 2633 39.3
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1580.1 2604 39.0
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1576.6 2608 39.1
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1570.1 2542 40.4
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1565.4 2661 38.2
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1561.6 2661 38.3
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1559.7 2615 38.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1559.3 2563 38.9
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1557.7 2660 38.2
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1530.0 2552 40.0
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1517.7 2532 38.9
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1506.9 2678 37.1
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1490.3 1797 48.3
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1476.5 2779 36.2
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1420.6 2129 41.7
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1403.3 2599 36.8
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1360.9 2575 35.3
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1331.6 2313 37.2
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1295.8 2660 34.3
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1278.8 2051 40.1
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1255.4 2307 37.2
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1226.5 2023 38.3
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1224.9 893 74.1
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1192.2 1755 42.1
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1179.5 2112 37.6
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1176.0 2053 37.9
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1161.7 2321 34.9
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.9e-280 969.5 1803 36.6
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.5e-273 948.0 716 71.5
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.1e-258 897.1 1719 36.5
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.3e-221 774.6 1072 46.3
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.1e-221 773.5 788 53.9
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.5e-215 753.4 488 80.7
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 3.8e-208 730.7 909 47.5
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 5.2e-189 667.2 817 47.7
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.7e-187 662.1 2724 25.6
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.1e-183 649.4 2739 25.9
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.4e-173 615.9 466 73.2
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 4.0e-173 614.4 2542 25.5
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.7e-168 599.0 624 53.5
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.7e-163 581.3 2527 25.4
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 4.6e-161 574.3 2771 25.0
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 6.8e-157 560.5 566 55.3
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.5e-153 548.1 1146 34.0
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 3.2e-146 525.0 599 49.9
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.0e-137 494.2 327 80.1
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 4.2e-130 471.5 352 72.2
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.7e-129 468.8 554 48.9
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.3e-127 461.8 933 34.6
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 5.6e-127 461.1 754 39.5
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.9e-113 414.1 374 62.0
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 3.9e-112 411.8 524 43.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.9e-111 409.5 1141 30.8
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.0e-107 397.1 651 40.6
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.6e-105 389.8 1136 29.3
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.8e-96 359.8 418 49.3
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.7e-92 344.4 708 34.6
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 6.5e-91 341.3 312 61.9
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 2.9e-83 315.8 2972 21.7
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.8e-70 272.7 480 37.7
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.1e-49 203.4 177 57.6
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 6.8e-48 198.4 342 35.4
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.9e-45 190.3 176 60.2
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 9.2e-45 188.0 175 56.0
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.2e-38 166.8 152 57.9
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 2.3e-35 156.8 213 42.3
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.5e-34 154.1 352 32.7
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.3e-34 151.8 275 37.8
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 2.3e-32 146.7 349 33.2
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.2e-31 144.4 156 48.1
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.1e-29 137.9 251 40.2
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 3.3e-26 126.3 140 42.9
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.6e-25 124.0 211 39.8
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.1e-24 119.8 122 50.0
BraA10t45354Z Brassica rapa HOM05D003876 ORTHO05D043045 6.8e-24 118.6 117 60.7
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.4e-21 110.9 342 24.3
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.6e-17 97.4 204 34.3
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 5.3e-16 92.4 84 51.2
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 9.0e-16 91.7 95 47.4
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.5e-15 90.9 119 43.7
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 9.9e-15 88.2 133 35.3
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.3e-14 87.8 96 47.9
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.3e-14 87.8 408 24.8
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.3e-14 87.8 408 24.8
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.2e-14 87.0 122 42.6
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 4.6e-12 79.3 66 63.6
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 3.9e-11 76.3 293 23.9
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 1.9e-10 73.9 146 36.3
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 7.4e-10 72.0 90 38.9
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 9.6e-10 71.6 63 52.4
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-09 70.5 130 39.2
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 8.1e-09 68.6 66 53.0
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 3.1e-08 66.6 113 31.9
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 5.3e-08 65.9 97 43.3
C03p92150 Brassica napus HOM05D001133 ORTHO05D000941 1.2e-07 64.7 54 61.1
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.9e-06 59.3 152 33.6
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.4e-06 58.5 131 33.6


User provided reference genes

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