Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 1.9e-228 795.4 387 100.0
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 5.4e-215 750.7 387 94.3
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 9.3e-207 723.4 387 90.4
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 4.3e-204 714.5 387 89.4
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.3e-203 713.0 387 88.6
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 2.4e-202 708.8 387 88.1
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 4.6e-198 694.5 389 87.1
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 2.8e-195 685.3 387 85.8
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 2.8e-195 685.3 387 85.8
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 5.3e-194 681.0 389 85.9
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.6e-153 545.8 389 67.9
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 3.5e-153 545.4 378 72.5
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 8.5e-152 540.8 389 65.8
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 2.5e-151 539.3 386 66.8
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 3.6e-150 535.4 388 67.3
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 6.1e-150 534.6 384 66.1
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 1.2e-148 530.4 392 67.1
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 4.4e-148 528.5 383 66.8
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.1e-146 523.9 387 63.6
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 1.8e-146 523.1 389 65.0
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 3.1e-146 522.3 385 64.7
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 4.5e-145 518.5 404 62.9
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.0e-144 517.3 384 64.8
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.7e-144 516.5 388 63.9
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 2.7e-142 509.2 454 57.5
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.7e-142 509.2 403 61.5
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 4.7e-142 508.4 387 62.5
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.4e-141 506.9 383 64.2
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 6.8e-141 504.6 385 62.9
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 1.5e-140 503.4 385 61.3
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 2.6e-140 502.7 388 64.4
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 3.4e-140 502.3 383 63.7
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 4.4e-140 501.9 406 59.1
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 5.7e-140 501.5 383 63.7
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 7.5e-140 501.1 385 63.6
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 1.7e-139 500.0 384 61.7
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.2e-139 499.6 385 62.1
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 2.8e-139 499.2 387 62.3
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 8.3e-139 497.7 386 62.4
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.1e-138 497.3 376 61.7
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.8e-138 496.5 385 62.3
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.1e-138 495.7 385 60.5
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 4.1e-138 495.4 386 62.7
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 4.1e-138 495.4 388 62.9
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 9.1e-138 494.2 409 58.4
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 2.7e-137 492.7 383 59.3
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 4.5e-137 491.9 384 61.5
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 7.7e-137 491.1 384 63.5
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.7e-136 490.0 382 59.4
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.9e-136 489.2 394 61.7
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 3.8e-136 488.8 389 60.9
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 6.6e-136 488.0 387 61.5
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.5e-135 486.9 472 53.0
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.6e-134 483.4 387 61.0
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.8e-134 482.6 406 56.9
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 2.8e-134 482.6 382 60.5
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 4.7e-134 481.9 387 60.7
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 8.0e-134 481.1 382 61.3
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.0e-133 480.7 382 60.2
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 5.2e-133 478.4 384 60.2
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.2e-132 477.2 427 57.6
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 5.7e-132 474.9 387 58.7
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 9.8e-132 474.2 384 59.9
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.3e-131 473.8 423 57.4
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 1.3e-131 473.8 411 58.4
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 2.8e-131 472.6 496 50.6
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 3.7e-131 472.2 382 58.4
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 6.3e-131 471.5 381 59.6
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 7.8e-129 464.5 356 61.2
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 2.5e-127 459.5 359 64.1
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 2.8e-126 456.1 383 60.1
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.3e-125 453.0 405 55.3
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 5.2e-125 451.8 371 59.3
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 4.4e-124 448.7 365 58.9
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.9e-122 443.4 383 56.9
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 3.2e-122 442.6 388 58.5
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 3.5e-121 439.1 382 55.5
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.2e-118 430.6 386 56.2
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 2.8e-118 429.5 391 55.0
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 6.2e-118 428.3 383 55.6
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.1e-117 427.6 382 53.4
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 1.3e-115 420.6 381 55.6
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 3.9e-112 409.1 381 57.2
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.5e-111 407.1 502 46.8
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 5.6e-111 405.2 295 70.8
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 3.4e-108 396.0 377 52.5
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 7.5e-108 394.8 305 62.0
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 4.0e-93 345.9 330 52.7
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 5.3e-93 345.5 385 44.7
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.2e-90 336.3 415 46.5
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 9.3e-90 334.7 216 72.2
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 3.3e-87 326.2 382 44.2
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 9.6e-87 324.7 277 56.3
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.5e-79 300.8 214 65.0
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 7.6e-76 288.5 381 40.7
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 8.4e-75 285.0 167 77.2
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.8e-70 270.0 410 43.4
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 3.1e-69 266.5 394 39.8
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.7e-65 253.4 236 55.5
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.0e-64 251.5 167 67.1
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.9e-63 247.3 238 52.9
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 2.5e-63 246.9 187 63.6
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.1e-58 231.5 383 39.7
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.2e-57 228.0 140 72.9
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 7.9e-57 225.3 561 29.1
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.2e-54 217.2 250 48.8
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 7.7e-52 208.8 153 63.4
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 9.4e-50 201.8 382 36.9
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.1e-49 200.7 99 93.9
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.3e-48 197.2 135 69.6
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 1.5e-47 194.5 143 62.9
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 3.7e-46 189.9 119 73.9
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 3.1e-45 186.8 248 41.1
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.0e-44 184.1 114 73.7
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 1.9e-42 177.6 272 38.6
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.5e-42 177.2 241 42.3
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 3.9e-40 169.9 443 28.7
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 2.9e-35 153.7 177 49.7
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 2.0e-28 131.0 79 72.2
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 7.7e-28 129.0 172 41.3
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.8e-27 126.7 393 29.8
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 8.5e-27 125.6 458 26.2
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.6e-25 121.3 222 35.6
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.6e-25 121.3 222 35.6
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 3.1e-21 107.1 420 26.4
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 7.2e-18 95.9 53 81.1
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 1.8e-16 91.3 97 50.5
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.0e-15 87.8 51 72.5
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 3.7e-14 83.6 103 48.5
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.2e-12 78.6 59 54.2
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 1.0e-11 75.5 357 24.4
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 3.3e-10 70.5 391 23.8
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 5.6e-10 69.7 327 22.3
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 3.6e-09 67.0 305 21.6
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 8.0e-09 65.9 371 22.6
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 5.2e-08 63.2 52 55.8
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 6.8e-08 62.8 301 22.9
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 6.8e-08 62.8 301 22.9
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 6.8e-08 62.8 356 23.9
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 6.8e-08 62.8 144 25.7
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 8.9e-08 62.4 301 24.6
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.2e-07 62.0 49 59.2
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 1.5e-07 61.6 371 21.6
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 2.6e-07 60.8 158 27.2
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 4.4e-07 60.1 372 21.8
Eucgr.B00173 Eucalyptus grandis HOM05D000464 ORTHO05D006292 5.8e-07 59.7 307 21.2
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 5.8e-07 59.7 301 21.6
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 7.5e-07 59.3 144 24.3
CBR_g8695 Chara braunii HOM05D000163 ORTHO05D009137 7.5e-07 59.3 134 29.1
Sed0016445 Sechium edule HOM05D000464 ORTHO05D006292 9.8e-07 58.9 144 26.4
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 1.3e-06 58.5 306 20.6
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 1.3e-06 58.5 348 25.0
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 1.3e-06 58.5 49 61.2
Actinidia08973 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.7e-06 58.2 154 26.6
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 1.7e-06 58.2 347 22.8
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.7e-06 58.2 179 21.8
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 2.2e-06 57.8 309 22.0
AagrBONN_evm.TU.Sc2ySwM_117.51 Anthoceros agrestis HOM05D003006 ORTHO05D003438 4.9e-06 56.6 147 27.9
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 6.4e-06 56.2 163 24.5
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 6.4e-06 56.2 144 23.6
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 8.3e-06 55.8 302 20.9
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 8.3e-06 55.8 167 25.7


User provided reference genes

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