Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 0.0e+00 1443.3 717 100.0
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 0.0e+00 1371.3 717 95.0
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 0.0e+00 1329.3 717 92.3
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 0.0e+00 1325.5 722 91.1
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 0.0e+00 1319.3 718 91.8
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 0.0e+00 1298.5 722 89.9
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 0.0e+00 1295.8 718 89.6
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1288.9 723 88.9
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 0.0e+00 1286.2 723 88.8
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 0.0e+00 1280.4 723 88.1
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1273.8 723 88.0
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 0.0e+00 1208.7 735 81.2
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 0.0e+00 1156.4 725 79.2
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 6.6e-299 1030.4 716 69.4
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 3.3e-298 1028.1 716 69.1
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 2.1e-297 1025.4 716 68.9
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 6.1e-297 1023.8 715 68.8
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 724 67.8
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 4.4e-295 1017.7 714 68.3
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 9.8e-295 1016.5 724 68.5
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 2.2e-294 1015.4 723 69.2
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.4e-293 1011.9 716 68.7
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 5.4e-293 1010.7 712 68.4
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 9.2e-293 1010.0 719 67.6
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.6e-292 1009.2 716 68.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 2.0e-292 1008.8 715 68.0
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 2.7e-292 1008.4 715 67.6
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 4.6e-292 1007.7 715 67.8
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 7.8e-292 1006.9 715 67.8
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 8.6e-291 1003.4 715 68.1
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 4.7e-289 997.7 725 67.4
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 5.8e-287 990.7 716 68.2
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 2.4e-285 985.3 723 67.1
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.4e-285 985.3 717 67.8
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 4.6e-284 981.1 721 66.9
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 7.8e-284 980.3 726 65.8
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 5.6e-282 974.2 721 66.7
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 8.3e-278 960.3 719 65.0
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 3.2e-277 958.4 719 64.7
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 6.0e-276 954.1 723 64.9
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 6.0e-276 954.1 722 64.7
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.6e-273 946.0 718 64.9
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.6e-273 944.9 722 64.5
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 6.2e-273 944.1 718 63.2
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.8e-272 942.6 708 64.4
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.5e-271 939.5 718 64.3
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.0e-271 939.1 718 63.5
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.1e-269 933.3 708 63.7
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.4e-269 932.9 715 63.2
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 3.2e-269 931.8 715 63.6
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 9.2e-269 930.2 715 63.6
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.2e-268 929.9 700 63.7
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 2.1e-268 929.1 691 64.3
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 3.5e-268 928.3 710 64.1
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 7.8e-268 927.2 721 63.2
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 8.7e-267 923.7 710 62.8
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.5e-266 922.9 710 63.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.5e-266 922.9 691 64.1
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 3.3e-266 921.8 722 62.6
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 3.3e-266 921.8 724 63.4
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 5.2e-264 914.4 704 62.9
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.5e-263 912.9 722 62.5
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 2.2e-262 909.1 724 62.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.1e-261 906.7 658 66.9
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 7.1e-261 904.0 720 62.1
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.2e-260 903.3 633 69.0
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.6e-260 902.9 720 61.8
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 7.8e-260 900.6 716 63.1
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.3e-259 899.8 736 60.3
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 3.6e-257 891.7 726 60.5
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.1e-256 890.2 652 65.8
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 2.4e-256 889.0 719 63.1
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 9.0e-256 887.1 720 61.0
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.2e-255 886.7 722 61.1
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 2.9e-254 882.1 719 61.1
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 7.9e-252 874.0 728 59.9
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.3e-251 873.2 711 62.4
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 1.1e-250 870.2 629 66.9
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.5e-250 869.0 654 65.6
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 7.4e-250 867.5 625 66.6
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 9.3e-245 850.5 726 59.1
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 8.7e-243 844.0 983 48.5
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 5.6e-242 841.3 722 58.0
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 7.4e-242 840.9 706 58.8
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 7.4e-242 840.9 732 56.7
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.3e-241 840.1 715 60.0
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.6e-241 839.7 644 62.7
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 2.4e-240 835.9 589 67.4
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 3.2e-237 825.5 733 56.1
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.7e-236 822.4 541 72.3
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 7.4e-234 814.3 583 66.6
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 7.4e-226 787.7 710 56.3
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 2.8e-225 785.8 568 65.3
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 3.4e-223 778.9 851 48.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 8.2e-209 731.1 977 45.8
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 2.7e-204 716.1 724 54.1
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-188 664.1 381 85.8
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 5.0e-182 642.1 453 68.0
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 5.6e-173 612.1 746 44.2
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 5.8e-170 602.1 483 61.5
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 4.3e-157 559.3 702 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 5.8e-146 522.3 637 44.3
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 5.4e-144 515.8 362 66.3
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.3e-132 478.0 440 54.5
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 5.5e-96 356.3 277 58.8
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 7.7e-90 335.9 225 73.3
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 6.1e-87 326.2 254 63.8
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 6.1e-79 299.7 290 55.2
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.7e-76 291.6 263 55.9
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 1.9e-64 251.5 288 48.3
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 2.6e-61 241.1 148 73.0
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.2e-59 234.2 166 71.7
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.1e-43 179.9 283 38.5
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 6.8e-38 163.3 154 53.9
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.2e-37 162.5 283 36.0
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.8e-36 157.5 230 39.6
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-33 146.4 169 43.8
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 4.4e-29 134.0 109 66.1
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.3e-28 132.5 114 56.1
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 3.8e-28 131.0 124 56.5
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 5.4e-27 127.1 89 65.2
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 9.3e-27 126.3 109 64.2
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.2e-26 125.9 153 42.5
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 2.1e-26 125.2 84 69.0
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 2.7e-26 124.8 109 63.3
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.0e-25 121.3 84 67.9
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 7.3e-24 116.7 107 55.1
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.8e-23 114.0 98 56.1
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 2.6e-21 108.2 102 55.9
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 2.9e-20 104.8 74 67.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 2.9e-20 104.8 71 64.8
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 8.4e-20 103.2 620 22.4
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.7e-18 98.2 66 68.2
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.8e-17 95.5 57 82.5
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 5.1e-17 94.0 70 61.4
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 8.7e-17 93.2 57 80.7
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 8.7e-17 93.2 57 80.7
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.1e-16 92.8 61 68.9
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 1.5e-16 92.4 57 80.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 5.6e-16 90.5 90 53.3
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.4e-14 85.9 55 81.8
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.4e-14 85.1 58 65.5
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.0e-13 82.0 64 65.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 2.0e-13 82.0 79 54.4
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 2.6e-13 81.6 129 38.8
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.6e-13 81.6 55 69.1
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-13 80.1 108 42.6
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 4.9e-12 77.4 53 64.2
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 1.1e-11 76.3 51 78.4
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.1e-11 76.3 71 56.3
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.9e-11 75.5 167 30.5
BolC7t40477H Brassica oleracea HOM05D048856 ORTHO05D042196 3.0e-09 68.2 66 56.1
C07p00260 Brassica napus HOM05D048856 ORTHO05D042196 3.3e-08 64.7 66 56.1
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 4.3e-08 64.3 48 64.6
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 7.4e-08 63.5 42 69.0
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 9.6e-08 63.2 74 47.3
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 9.6e-08 63.2 354 20.9
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.6e-07 62.4 71 49.3
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-06 59.7 47 68.1
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.1e-06 59.7 46 56.5


User provided reference genes

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