Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.2e-293 1011.5 497 100.0
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 5.8e-262 907.1 480 92.5
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 1.6e-259 899.0 483 90.9
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 2.7e-259 898.3 480 90.6
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 1.0e-258 896.3 482 91.9
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 1.0e-258 896.3 484 90.9
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 3.3e-257 891.3 480 90.8
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 7.3e-257 890.2 482 89.4
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 7.3e-257 890.2 482 89.4
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 3.6e-256 887.9 484 89.3
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-254 881.3 483 88.6
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.4e-246 854.7 509 83.1
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 5.5e-244 847.4 458 89.5
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 2.7e-243 845.1 485 85.6
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.8e-242 842.4 458 88.9
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 5.7e-241 837.4 461 88.3
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-233 812.8 454 86.8
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 5.7e-233 810.8 474 81.2
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 1.1e-231 806.6 512 78.5
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 5.3e-231 804.3 476 83.2
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.4e-220 769.6 486 79.6
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 1.9e-220 769.2 470 77.0
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 1.8e-218 762.7 470 76.4
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 3.0e-218 761.9 470 76.6
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 3.9e-218 761.5 470 76.4
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.7e-218 760.8 470 74.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 1.5e-217 759.6 470 76.8
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 2.6e-217 758.8 470 75.5
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 4.4e-217 758.1 470 75.7
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 2.8e-216 755.4 473 75.5
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 3.1e-215 751.9 471 75.8
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 9.1e-215 750.4 470 74.9
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 3.5e-214 748.4 471 75.2
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 1.7e-213 746.1 470 74.5
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 3.8e-213 745.0 473 74.6
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.8e-213 745.0 470 74.5
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 1.6e-211 739.6 473 73.6
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 2.7e-211 738.8 470 74.3
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 8.0e-211 737.3 480 72.5
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 2.3e-210 735.7 481 73.8
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 6.7e-210 734.2 470 74.3
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 1.1e-209 733.4 470 73.8
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 2.6e-209 732.3 482 72.6
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 2.6e-209 732.3 470 73.8
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 3.3e-209 731.9 467 73.7
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 3.3e-209 731.9 481 74.4
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 5.7e-209 731.1 476 73.1
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 9.7e-209 730.3 470 73.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 1.3e-208 729.9 470 73.4
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.7e-208 729.6 469 72.9
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 1.7e-208 729.6 458 74.5
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 1.7e-208 729.6 470 74.9
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 1.7e-208 729.6 470 72.3
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 2.8e-208 728.8 481 69.4
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 3.7e-208 728.4 473 74.8
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 4.8e-208 728.0 481 73.6
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 6.3e-208 727.6 469 73.1
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 1.1e-207 726.9 481 72.1
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 1.8e-207 726.1 481 74.2
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 1.8e-207 726.1 469 72.9
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 2.4e-207 725.7 470 71.5
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 4.1e-207 724.9 470 73.8
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 7.0e-207 724.2 473 74.2
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 7.0e-207 724.2 475 72.8
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 9.1e-207 723.8 473 74.0
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 9.1e-207 723.8 473 74.0
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 9.1e-207 723.8 481 74.0
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 1.2e-206 723.4 451 74.7
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 1.6e-206 723.0 481 71.3
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 1.6e-206 723.0 469 72.7
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 4.5e-206 721.5 451 75.4
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 1.7e-205 719.5 451 74.9
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.7e-205 719.5 472 72.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 2.2e-205 719.2 493 71.2
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 2.2e-205 719.2 481 71.7
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 2.9e-205 718.8 470 72.3
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 3.8e-205 718.4 471 72.4
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 6.5e-205 717.6 469 72.9
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 1.1e-204 716.8 481 73.0
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 1.5e-204 716.5 470 71.5
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 5.5e-204 714.5 469 72.3
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 9.4e-204 713.8 480 71.9
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 1.6e-203 713.0 472 73.1
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 2.1e-203 712.6 472 72.9
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 2.1e-203 712.6 470 71.9
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 6.1e-203 711.1 480 71.9
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 8.0e-203 710.7 481 70.1
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 1.4e-202 709.9 455 73.8
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 5.2e-202 708.0 490 70.8
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 3.7e-200 701.8 472 69.7
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 1.1e-199 700.3 532 64.5
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 1.8e-199 699.5 469 69.3
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 2.7e-198 695.7 481 70.7
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 3.5e-198 695.3 460 72.6
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 3.8e-197 691.8 450 73.3
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 8.5e-197 690.6 470 67.9
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-196 689.9 465 75.7
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 3.0e-194 682.2 449 71.9
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 5.2e-194 681.4 547 62.2
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 3.4e-193 678.7 458 74.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 2.8e-192 675.6 469 67.4
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 7.3e-188 661.0 470 68.1
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.2e-187 660.2 456 67.5
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 1.6e-187 659.8 470 66.6
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 4.9e-184 648.3 470 67.0
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 2.0e-182 642.9 469 67.2
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 2.7e-182 642.5 449 67.5
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 1.9e-180 636.3 480 66.0
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 5.2e-170 601.7 392 74.0
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.1e-164 583.9 448 62.7
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 2.3e-162 576.2 451 63.4
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 2.7e-158 562.8 484 55.4
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 5.2e-154 548.5 365 72.1
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.3e-149 533.1 366 68.0
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.1e-148 530.8 484 54.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.5e-145 520.4 366 67.2
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 6.0e-142 508.4 277 89.9
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 4.0e-138 495.7 465 52.9
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.0e-112 411.4 238 82.8
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.6e-110 404.1 295 65.8
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.1e-109 399.1 271 72.0
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.5e-100 370.9 215 82.3
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.4e-100 369.4 237 75.5
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 5.7e-100 369.0 270 68.1
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 2.8e-99 366.7 235 77.0
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 2.4e-82 310.5 539 34.1
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 8.5e-80 302.0 215 64.7
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 1.8e-74 284.3 199 71.4
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 3.0e-69 266.9 154 79.9
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.8e-66 257.7 167 67.1
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 2.1e-41 174.5 122 64.8
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.1e-26 125.6 83 68.7
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.3e-24 118.6 85 62.4
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 6.7e-24 116.3 112 50.0
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.3e-22 112.1 85 60.0
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 8.1e-22 109.4 55 89.1
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.5e-18 96.7 100 48.0
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 6.0e-17 93.2 79 57.0
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 3.0e-16 90.9 79 55.7
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 5.1e-16 90.1 61 63.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 6.2e-14 83.2 74 58.1
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.3e-11 75.5 57 56.1
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 6.5e-11 73.2 74 52.7
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 4.2e-10 70.5 56 53.6


User provided reference genes

Program Settings