Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 2115.1 1063 100.0
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 2026.1 1065 96.1
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1996.1 1063 93.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1989.2 1067 93.7
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1975.7 1069 93.0
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1912.1 1068 90.6
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1911.3 1068 90.5
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1883.6 1070 89.4
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1849.3 1278 76.4
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1840.5 1072 87.9
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1755.7 1060 81.6
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1741.5 1105 80.9
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1580.5 1055 73.7
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1576.6 1056 74.1
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1565.4 1055 73.5
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1564.7 1055 73.4
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1558.5 1054 72.8
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1557.7 1057 72.6
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1553.5 1057 72.6
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1546.2 1055 72.6
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1540.0 1055 72.3
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1539.6 1056 72.7
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1538.1 1057 72.3
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1537.7 1058 71.9
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1533.1 1055 72.1
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1531.5 1055 71.3
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1529.6 1053 71.8
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1524.2 1055 72.0
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1519.2 1055 70.9
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1518.8 1055 72.1
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1515.4 1055 71.8
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1510.0 1055 71.2
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1508.0 1055 70.9
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1505.0 1057 69.9
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1504.6 1074 70.9
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1504.6 1074 70.9
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1502.6 1055 70.9
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1502.3 1062 70.8
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1501.5 1054 71.0
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1501.1 1062 70.7
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1055 70.1
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1499.2 1055 71.1
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1494.2 1055 71.0
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1492.2 1057 70.0
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1491.1 1061 70.2
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1490.3 1039 71.7
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1484.9 1059 70.2
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1484.5 1120 66.8
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1481.8 1055 68.4
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1476.1 1054 69.8
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1476.1 1141 66.3
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1473.4 1055 69.8
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1453.3 1040 69.4
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1045 68.5
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1056 68.7
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1448.7 1054 69.7
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1447.6 1054 69.3
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1444.9 1056 68.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1442.9 1059 68.1
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1442.2 1054 68.9
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1440.6 1056 68.1
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1440.2 1146 64.0
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1439.1 1061 68.1
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1437.9 1054 67.8
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1432.9 1055 67.9
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1432.9 1054 69.2
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1431.0 1054 67.5
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1424.5 1054 66.8
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1419.8 1052 66.4
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1416.7 960 72.7
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1413.3 1055 66.6
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1411.0 1057 66.5
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1410.6 1055 66.4
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1407.1 978 71.5
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1403.3 1065 68.0
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1401.7 1056 66.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1394.8 1055 65.8
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1391.3 1060 65.5
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1389.8 1054 66.7
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1379.4 1132 62.7
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1378.6 1055 65.8
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1378.2 1075 65.9
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1371.7 1054 66.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1370.5 1065 64.6
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1355.5 1059 63.5
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1331.6 947 70.0
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1265.0 1054 61.1
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1251.1 855 71.9
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1250.0 852 72.3
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1248.8 851 72.4
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1209.1 801 74.7
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1099.0 789 68.3
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1096.6 1084 52.6
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 5.3e-305 1051.2 790 67.2
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 3.8e-303 1045.0 1059 51.5
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.8e-300 1036.2 960 57.8
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 5.0e-295 1018.1 527 94.9
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.1e-286 990.3 1077 50.0
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 3.3e-270 935.6 780 62.3
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.5e-262 910.2 480 92.5
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.9e-262 909.8 632 71.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 3.3e-262 909.1 949 54.0
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 7.3e-254 881.3 506 85.8
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.9e-246 856.7 460 90.0
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.2e-245 854.0 460 89.8
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.4e-244 849.7 463 89.2
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.2e-235 820.8 456 87.3
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 4.2e-233 812.4 478 83.9
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.5e-232 809.3 516 74.8
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.6e-229 799.3 660 60.6
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.3e-221 774.2 489 79.3
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.2e-205 720.3 701 55.1
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.4e-204 716.8 470 71.1
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.9e-201 707.2 465 77.4
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 8.2e-197 691.8 460 75.7
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 6.9e-196 688.7 449 73.5
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 9.7e-190 668.3 456 69.3
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 4.8e-181 639.4 452 67.7
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.0e-167 595.1 448 63.6
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 8.3e-157 558.9 428 65.0
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 3.1e-151 540.4 400 68.5
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.2e-150 538.5 366 69.4
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.0e-146 525.4 366 68.6
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-145 521.5 277 92.1
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.3e-145 520.0 405 65.2
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 3.6e-144 516.9 1117 32.3
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.3e-138 498.4 614 47.1
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 2.7e-115 421.0 238 84.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.3e-112 412.1 295 66.4
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.9e-109 401.0 271 73.1
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 4.0e-103 380.6 215 84.2
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.0e-103 380.6 242 75.6
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.2e-102 379.0 270 69.3
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 3.8e-101 374.0 235 78.3
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 5.0e-93 347.1 318 57.9
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 2.6e-70 271.6 155 80.0
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 1.2e-59 236.1 286 47.2
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 5.7e-57 227.3 209 56.0
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.2e-49 203.0 206 54.9
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 3.7e-48 198.0 180 61.7
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.1e-47 194.5 156 60.9
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 4.0e-42 177.9 122 65.6
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 6.6e-37 160.6 162 54.3
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 9.5e-36 156.8 110 70.9
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 6.8e-34 150.6 208 44.7
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 2.2e-32 145.6 106 69.8
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 4.6e-30 137.9 97 71.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 6.6e-29 134.0 85 70.6
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 3.6e-27 128.3 83 71.1
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 3.6e-27 128.3 137 52.6
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 4.7e-27 127.9 137 52.6
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 6.8e-26 124.0 96 61.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 6.4e-24 117.5 96 59.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.2e-22 113.2 55 90.9
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.4e-18 99.8 62 79.0
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 3.8e-16 91.7 84 53.6
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 1.1e-15 90.1 80 56.2
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 2.7e-14 85.5 61 63.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 4.6e-14 84.7 74 58.1
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.0e-13 83.6 53 75.5
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.7e-13 82.8 76 59.2
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.7e-13 82.8 75 60.0
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 7.3e-12 77.4 57 59.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 4.7e-11 74.7 74 52.7
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 6.2e-11 74.3 41 80.5
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.4e-10 72.4 56 57.1
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 2.6e-09 68.9 79 49.4
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 2.9e-08 65.5 48 68.8
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 7.1e-07 60.8 36 72.2
A05p15350 Brassica napus HOM05D000631 ORTHO05D014970 2.1e-06 59.3 33 81.8
BraA05t20453Z Brassica rapa HOM05D000631 ORTHO05D014970 2.1e-06 59.3 33 81.8
A02p23260 Brassica napus HOM05D000631 ORTHO05D014970 3.5e-06 58.5 33 81.8
AL5G20110 Arabidopsis lyrata HOM05D004198 ORTHO05D080677 4.6e-06 58.2 38 71.1


User provided reference genes

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