Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.1e-310 1068.1 531 100.0
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.4e-261 906.0 531 85.7
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.0e-240 836.6 535 78.5
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.3e-232 809.7 526 77.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 2.5e-226 788.9 530 76.0
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.7e-187 659.8 533 64.5
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-176 623.6 528 63.3
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 2.7e-172 609.4 530 60.6
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 8.6e-171 604.4 530 59.2
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-168 597.4 528 59.5
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-168 597.4 528 59.5
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.1e-168 597.4 528 59.5
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.0e-155 552.7 556 54.9
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.9e-154 550.1 554 54.9
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.7e-134 483.8 535 49.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 8.1e-129 464.9 540 47.6
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 4.5e-127 459.1 539 46.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 6.5e-126 455.3 539 45.8
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.5e-124 449.5 539 45.6
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 3.5e-124 449.5 541 45.3
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.0e-123 448.0 534 46.8
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.7e-123 445.3 533 45.2
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.9e-122 443.7 533 44.7
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.5e-122 443.4 541 45.1
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 3.3e-122 443.0 531 44.6
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 4.3e-122 442.6 536 45.3
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 4.3e-122 442.6 549 45.0
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 7.4e-122 441.8 545 45.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 9.6e-122 441.4 552 44.6
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 9.6e-122 441.4 534 42.9
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.1e-121 440.3 531 45.0
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 2.8e-121 439.9 545 45.3
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.8e-121 439.9 541 44.5
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 4.8e-121 439.1 533 45.2
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 6.3e-121 438.7 534 44.9
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.1e-120 438.0 539 44.7
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.4e-120 437.6 541 45.3
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.8e-120 437.2 543 45.5
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.4e-120 436.8 549 44.8
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 3.1e-120 436.4 543 45.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.2e-119 434.5 558 45.0
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.0e-119 433.7 543 44.9
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 2.0e-119 433.7 545 44.8
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.4e-119 433.0 537 45.1
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.0e-118 431.4 541 46.0
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.0e-118 431.4 529 44.4
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.9e-118 429.9 547 44.1
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.9e-118 429.9 552 43.3
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 3.8e-118 429.5 548 44.7
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.8e-118 429.5 540 44.4
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.4e-117 427.6 541 42.5
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.9e-117 427.2 536 43.1
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 3.2e-117 426.4 539 42.9
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.2e-117 426.4 536 44.0
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.5e-117 425.6 540 45.7
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 9.3e-117 424.9 547 43.1
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.2e-116 424.5 547 43.5
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.1e-116 423.7 541 43.6
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.7e-116 423.3 543 43.3
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 6.1e-116 422.2 534 44.0
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.0e-115 421.4 539 43.4
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.0e-115 421.4 531 43.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.3e-115 420.2 540 44.8
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 3.9e-115 419.5 545 42.8
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 8.7e-115 418.3 527 43.8
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 4.3e-114 416.0 532 42.3
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.3e-114 416.0 542 43.0
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.6e-113 414.1 549 41.9
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.6e-113 414.1 536 42.4
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 3.7e-113 412.9 559 41.7
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 6.3e-113 412.1 531 42.9
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 8.2e-113 411.8 535 42.6
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.4e-112 411.0 544 42.8
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.4e-112 411.0 545 43.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.4e-112 410.2 542 42.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.1e-112 409.5 534 42.9
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.9e-112 408.7 539 42.5
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 6.9e-112 408.7 539 42.9
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.1e-112 408.3 534 42.7
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.5e-111 406.0 539 42.9
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 6.1e-108 395.6 528 41.3
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.8e-105 386.7 455 46.8
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 4.8e-105 386.0 458 46.9
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.3e-105 385.6 543 42.0
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 5.0e-102 375.9 546 40.3
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 6.7e-99 365.5 543 39.4
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.6e-98 363.6 541 41.2
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 9.7e-98 361.7 538 40.9
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 9.7e-98 361.7 541 41.2
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 2.2e-97 360.5 550 39.1
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 2.4e-96 357.1 534 37.8
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 3.8e-94 349.7 531 37.3
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 9.7e-90 335.1 548 35.6
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.1e-88 331.6 551 38.1
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.5e-85 320.5 544 35.5
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-82 311.6 443 44.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 9.8e-82 308.5 533 34.7
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 4.5e-79 299.7 423 40.7
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.0e-78 298.5 429 39.9
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-78 298.1 584 34.8
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.5e-77 294.7 531 35.0
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.1e-76 290.8 302 53.6
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.0e-75 288.5 518 35.9
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.3e-73 281.6 551 35.0
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 6.6e-70 269.2 508 34.4
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-69 267.7 197 66.5
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 5.6e-69 266.2 300 45.7
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 5.2e-67 259.6 586 32.3
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 2.6e-66 257.3 484 35.1
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 3.4e-66 256.9 278 43.9
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.9e-65 253.8 334 43.1
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 6.4e-65 252.7 619 29.7
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.9e-57 226.5 222 46.4
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 6.4e-57 226.1 420 36.0
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.3e-53 213.4 302 41.4
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 2.0e-50 204.5 323 39.3
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 6.4e-49 199.5 563 28.6
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.1e-48 198.7 329 37.1
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 6.0e-47 193.0 582 30.1
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 2.9e-41 174.1 299 38.5
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.9e-40 171.4 125 68.8
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 8.1e-36 156.0 567 25.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 3.2e-32 144.1 105 62.9
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 5.1e-30 136.7 547 24.7
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.0e-22 112.5 303 26.4
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 4.2e-16 90.5 182 33.0
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 5.5e-16 90.1 208 32.7
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.0e-14 85.9 108 41.7
BolC3t20315H Brassica oleracea HOM05D002338 ORTHO05D006102 3.0e-14 84.3 101 48.5
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 1.5e-13 82.0 98 43.9
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 2.8e-12 77.8 210 30.5
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.4e-11 75.5 124 37.1
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.1e-11 74.3 122 38.5
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.3e-09 68.9 67 53.7
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.4e-08 65.5 56 46.4
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 9.3e-08 62.8 50 58.0
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-07 62.0 89 39.3
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 2.7e-07 61.2 156 28.2
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 6.0e-07 60.1 204 22.5
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.7e-06 56.2 53 52.8


User provided reference genes

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