Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 3.7e-224 781.6 504 100.0
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 2.1e-203 712.6 514 92.0
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 3.2e-191 672.2 502 86.1
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.4e-170 603.6 524 76.1
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 2.4e-170 602.8 525 78.3
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 2.2e-160 569.7 502 78.3
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 7.9e-150 534.6 440 76.6
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 3.7e-147 525.8 512 67.0
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.4e-146 523.9 512 67.2
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 4.1e-138 495.7 513 70.8
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 4.5e-137 492.3 511 61.8
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.7e-134 482.3 525 62.9
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.0e-133 481.1 436 65.4
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.8e-133 480.3 425 70.4
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 5.2e-133 478.8 434 65.2
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 4.4e-132 475.7 440 69.1
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.3e-131 474.2 515 64.3
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.5e-127 460.7 517 63.6
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.5e-127 460.7 517 63.6
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.0e-124 450.3 428 67.5
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 7.5e-124 448.4 429 66.4
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 9.8e-124 448.0 429 66.7
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 4.9e-123 445.7 521 59.9
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 3.1e-122 443.0 439 62.4
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 7.0e-122 441.8 424 66.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.6e-121 440.7 443 62.5
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.6e-121 440.7 519 64.5
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 7.8e-121 438.3 437 60.0
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.3e-120 437.6 427 62.3
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 6.6e-120 435.3 325 72.0
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 8.6e-120 434.9 504 59.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.5e-119 434.1 437 59.3
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 4.3e-119 432.6 424 65.6
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 5.6e-119 432.2 515 62.9
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 2.1e-118 430.3 435 56.8
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 2.1e-118 430.3 439 64.9
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 4.7e-118 429.1 532 63.3
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.0e-117 427.9 327 70.3
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.8e-117 427.2 327 70.3
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.3e-117 426.8 426 62.0
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.0e-117 426.0 436 61.2
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 1.5e-116 424.1 334 69.5
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.5e-116 424.1 444 58.6
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 2.0e-116 423.7 334 68.3
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.0e-116 423.7 436 58.7
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 4.4e-116 422.5 334 69.5
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 4.4e-116 422.5 440 65.9
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 5.7e-116 422.2 434 59.4
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 7.5e-116 421.8 445 60.7
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 7.5e-116 421.8 443 59.8
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 9.8e-116 421.4 440 60.2
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 1.3e-115 421.0 434 56.5
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.3e-115 421.0 434 56.5
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 3.7e-115 419.5 429 60.6
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 1.1e-114 417.9 333 67.6
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.8e-114 417.2 435 58.6
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.4e-114 416.8 490 63.5
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.2e-113 414.5 439 60.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.0e-113 413.7 327 67.9
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 2.0e-113 413.7 333 68.5
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 5.9e-113 412.1 329 68.1
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.7e-112 410.6 532 53.8
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 3.9e-112 409.5 333 67.0
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.5e-111 407.5 483 51.8
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 9.5e-111 404.8 429 60.1
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.2e-110 404.4 328 67.4
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.8e-110 403.3 358 63.7
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.6e-110 402.9 427 60.2
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 8.0e-110 401.7 437 57.0
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.1e-109 401.4 318 68.2
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 5.2e-109 399.1 436 62.6
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.4e-108 396.0 393 67.7
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 4.4e-108 396.0 334 64.4
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.8e-108 395.6 452 54.2
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.7e-107 394.0 434 61.5
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.7e-107 392.9 405 65.9
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 3.7e-107 392.9 331 65.3
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 6.4e-107 392.1 427 62.5
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.4e-106 391.0 433 61.2
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 3.2e-106 389.8 334 66.5
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 5.4e-106 389.0 441 60.5
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.6e-105 386.0 522 59.6
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 6.0e-105 385.6 473 60.7
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 1.1e-103 381.3 336 61.9
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.5e-103 380.9 409 62.1
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 4.3e-103 379.4 436 57.1
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 7.3e-103 378.6 373 64.1
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 7.3e-103 378.6 396 64.1
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 2.3e-101 373.6 301 67.4
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.6e-100 370.2 297 68.7
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 2.2e-99 367.1 288 69.8
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 2.9e-99 366.7 297 68.4
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 4.9e-99 365.9 284 70.4
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 6.4e-99 365.5 284 70.1
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 3.5e-97 359.8 382 59.7
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 3.3e-95 353.2 295 66.4
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 1.2e-94 351.3 411 52.6
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 4.7e-94 349.4 294 63.6
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.8e-93 347.4 392 61.0
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 5.2e-93 345.9 284 68.7
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 4.9e-91 339.3 366 52.7
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 6.4e-91 339.0 329 58.7
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 3.2e-90 336.7 593 41.5
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.6e-89 334.3 398 53.0
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.2e-84 318.2 263 66.5
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.4e-84 316.6 240 69.2
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 3.5e-81 306.6 319 52.0
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 3.3e-79 300.1 362 53.9
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 5.6e-79 299.3 425 48.5
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.6e-78 297.7 365 55.6
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 6.9e-77 292.4 255 62.0
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 1.5e-71 274.6 289 58.5
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 3.3e-71 273.5 342 49.1
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 4.5e-68 263.1 331 46.2
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.1e-63 248.4 321 44.5
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 7.9e-57 225.7 401 42.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 1.3e-54 218.4 220 57.3
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.8e-54 217.2 233 53.6
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.4e-53 214.2 301 41.9
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.2e-52 211.8 202 54.0
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.8e-48 198.0 300 42.3
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 3.6e-41 173.7 300 38.0
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 2.2e-38 164.5 135 65.9
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 4.4e-31 140.2 197 49.7
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 2.1e-25 121.3 156 50.0
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.0e-24 119.0 156 49.4
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.0e-24 119.0 156 49.4
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.0e-24 117.1 76 78.9
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.7e-14 85.1 84 54.8
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 1.8e-13 81.6 262 26.0
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 3.8e-11 73.9 63 60.3
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 3.8e-11 73.9 63 60.3
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 3.8e-11 73.9 63 60.3
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 9.5e-10 69.3 299 25.1
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 4.7e-09 67.0 112 44.6
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.0e-07 61.6 64 56.2
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 5.7e-07 60.1 103 36.9


User provided reference genes

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