Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G51300 Arabidopsis lyrata HOM05D003078 ORTHO05D079925 3.7e-27 124.0 58 100.0
AT5G23670 Arabidopsis thaliana HOM05D003078 ORTHO05D003545 1.8e-13 78.6 38 92.1
Carub.0006s2142 Capsella rubella HOM05D003078 ORTHO05D003545 1.8e-13 78.6 38 92.1
CARHR189870 Cardamine hirsuta HOM05D003078 ORTHO05D003545 5.2e-13 77.0 38 89.5
Thhalv10004251m.g Eutrema salsugineum HOM05D003078 ORTHO05D003545 2.0e-12 75.1 38 86.8
Cfa018729 Carpinus fangiana HOM05D003078 ORTHO05D003545 2.6e-12 74.7 38 86.8
CiPaw.11G002200 Carya illinoinensis HOM05D003078 ORTHO05D003545 3.4e-12 74.3 53 69.8
arahy.Tifrunner.gnm1.ann1.0IR88Q Arachis hypogaea HOM05D003078 ORTHO05D003545 4.4e-12 73.9 38 86.8
arahy.Tifrunner.gnm1.ann1.0KJ6B5 Arachis hypogaea HOM05D003078 ORTHO05D003545 4.4e-12 73.9 38 86.8
CARHR157550 Cardamine hirsuta HOM05D003078 ORTHO05D003545 4.4e-12 73.9 38 86.8
Lalb_Chr22g0360011 Lupinus albus HOM05D003078 ORTHO05D003545 4.4e-12 73.9 38 86.8
Aa31LG4G17330 Aethionema arabicum HOM05D003078 ORTHO05D003545 5.8e-12 73.6 38 86.8
Lalb_Chr14g0363921 Lupinus albus HOM05D003078 ORTHO05D003545 5.8e-12 73.6 38 86.8
Prupe.5G144700 Prunus persica HOM05D003078 ORTHO05D003545 5.8e-12 73.6 38 86.8
TAR371G0736 Trochodendron aralioides HOM05D003078 ORTHO05D003545 5.8e-12 73.6 38 86.8
Haze_07121 Corylus avellana HOM05D003078 ORTHO05D003545 1.3e-11 72.4 38 84.2
Manes.14G046600 Manihot esculenta HOM05D003078 ORTHO05D003545 1.3e-11 72.4 38 84.2
Medtr6g033290 Medicago truncatula HOM05D003078 ORTHO05D003545 1.3e-11 72.4 38 84.2
QL10p001065 Quercus lobata HOM05D003078 ORTHO05D003545 1.3e-11 72.4 38 84.2
THA.LOC104798919 Tarenaya hassleriana HOM05D003078 ORTHO05D003545 1.3e-11 72.4 38 84.2
Eucgr.K02201 Eucalyptus grandis HOM05D003078 ORTHO05D003545 1.7e-11 72.0 38 84.2
HanXRQChr10g0288551 Helianthus annuus HOM05D003078 ORTHO05D003545 1.7e-11 72.0 38 86.8
PGR044G0798 Punica granatum HOM05D003078 ORTHO05D003545 1.7e-11 72.0 38 84.2
CSS0030402 Camellia sinensis var. sinensis HOM05D003078 ORTHO05D003545 2.2e-11 71.6 38 84.2
Lalb_Chr02g0156801 Lupinus albus HOM05D003078 ORTHO05D003545 2.2e-11 71.6 38 84.2
TAR629G0860 Trochodendron aralioides HOM05D003078 ORTHO05D003545 2.2e-11 71.6 38 84.2
COL.COLO4_16693 Corchorus olitorius HOM05D003078 ORTHO05D003545 2.9e-11 71.2 38 84.2
Sabra12G0076900 Salix brachista HOM05D003078 ORTHO05D003545 3.7e-11 70.9 38 84.2
GSVIVG01008621001 Vitis vinifera HOM05D003078 ORTHO05D003545 3.7e-11 70.9 38 81.6
BcaB02g10618 Brassica carinata HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 78.9
BcaC01g02375 Brassica carinata HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 78.9
A06p27910 Brassica napus HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 78.9
C03p65960 Brassica napus HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 78.9
BolC3t18854H Brassica oleracea HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 78.9
BraA06t25732Z Brassica rapa HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 78.9
CARHR157580 Cardamine hirsuta HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 81.6
CiPaw.11G002100 Carya illinoinensis HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 81.6
Haze_14931 Corylus avellana HOM05D003078 ORTHO05D003545 4.9e-11 70.5 41 78.0
HanXRQChr05g0152901 Helianthus annuus HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 84.2
Psat1g097640 Pisum sativum HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 81.6
Sp5g13240 Schrenkiella parvula HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 81.6
TPR.G36680 Trifolium pratense HOM05D003078 ORTHO05D003545 4.9e-11 70.5 38 81.6
Glyma.16G146500 Glycine max HOM05D003078 ORTHO05D003545 6.4e-11 70.1 38 81.6
Gohir.D12G194900 Gossypium hirsutum HOM05D003078 ORTHO05D003545 6.4e-11 70.1 38 81.6
Gorai.008G209600 Gossypium raimondii HOM05D003078 ORTHO05D003545 6.4e-11 70.1 38 81.6
Lsat_1_v5_gn_4_84120 Lactuca sativa HOM05D003555 ORTHO05D004542 6.4e-11 70.1 38 84.2
Lj4g0003714 Lotus japonicus HOM05D003078 ORTHO05D003545 6.4e-11 70.1 38 81.6
Potri.012G104500 Populus trichocarpa HOM05D003078 ORTHO05D003545 6.4e-11 70.1 38 81.6
Cfa007178 Carpinus fangiana HOM05D003078 ORTHO05D003545 8.3e-11 69.7 38 81.6
Thhalv10010322m.g Eutrema salsugineum HOM05D003078 ORTHO05D003545 8.3e-11 69.7 38 81.6
Aqoxy4G02206 Aquilegia oxysepala HOM05D003078 ORTHO05D003545 1.1e-10 69.3 38 78.9
MSTRG.22883 Avicennia marina HOM05D003078 ORTHO05D003545 1.1e-10 69.3 38 78.9
Ciclev10015046m.g Citrus clementina HOM05D003078 ORTHO05D003545 1.1e-10 69.3 38 78.9
Dinv23199 Davidia involucrata HOM05D003078 ORTHO05D003545 1.1e-10 69.3 38 81.6
Os01g0928700 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 1.1e-10 69.3 38 81.6
Os01g0928800 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 1.1e-10 69.3 38 78.9
Thecc.03G137600 Theobroma cacao HOM05D003078 ORTHO05D003545 1.1e-10 69.3 38 78.9
BcaB05g22987 Brassica carinata HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
BcaC09g49902 Brassica carinata HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
A01p25220 Brassica napus HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
C01p31490 Brassica napus HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
BolC1t03083H Brassica oleracea HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
COL.COLO4_13342 Corchorus olitorius HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
Duzib068G1399 Durio zibethinus HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
QL02p069970 Quercus lobata HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 81.6
TWI32G1334 Tripterygium wilfordii HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
TWI34G0005 Tripterygium wilfordii HOM05D003078 ORTHO05D003545 1.4e-10 68.9 38 78.9
Atru.chr6.2634 Acer truncatum HOM05D003078 ORTHO05D003545 1.9e-10 68.6 38 78.9
AL5G28290 Arabidopsis lyrata HOM05D003078 ORTHO05D003545 1.9e-10 68.6 38 81.6
AT3G48780 Arabidopsis thaliana HOM05D003078 ORTHO05D003545 1.9e-10 68.6 38 81.6
EL10Ac5g11331 Beta vulgaris HOM05D003078 ORTHO05D003545 1.9e-10 68.6 38 76.3
Duzib264G0999 Durio zibethinus HOM05D003078 ORTHO05D003545 1.9e-10 68.6 38 78.9
Gohir.A12G192800 Gossypium hirsutum HOM05D003078 ORTHO05D003545 1.9e-10 68.6 38 78.9
Thecc.04G044900 Theobroma cacao HOM05D003078 ORTHO05D003545 1.9e-10 68.6 38 78.9
Carub.0005s1495 Capsella rubella HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 81.6
CAN.G65.80 Capsicum annuum HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 81.6
AUR62029525 Chenopodium quinoa HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 78.9
AUR62034784 Chenopodium quinoa HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 78.9
Glyma.02G065400 Glycine max HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 78.9
MBI07_g36276_MAGBIO Magnolia biondii HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 78.9
Nitab4.5_0001180g0130 Nicotiana tabacum HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 81.6
Nitab4.5_0003066g0060 Nicotiana tabacum HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 81.6
Os11g0516000 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 76.3
PSO017G2895 Papaver somniferum HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 76.3
PSO478G2975 Papaver somniferum HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 76.3
Peaxi162Scf00171g00522 Petunia axillaris HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 81.6
Peaxi162Scf00643g00660 Petunia axillaris HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 81.6
Prupe.3G312000 Prunus persica HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 78.9
PGSC0003DMG400031057 Solanum tuberosum HOM05D003078 ORTHO05D003545 2.4e-10 68.2 38 81.6
Migut.D01228 Erythranthe guttata HOM05D003078 ORTHO05D003545 3.2e-10 67.8 38 78.9
FAN05G2586 Fragaria x ananassa HOM05D003078 ORTHO05D003545 3.2e-10 67.8 38 78.9
FAN05G3970 Fragaria x ananassa HOM05D003078 ORTHO05D003545 3.2e-10 67.8 38 78.9
Lsat_1_v5_gn_5_10500 Lactuca sativa HOM05D003078 ORTHO05D003545 3.2e-10 67.8 38 81.6
QL02p070001 Quercus lobata HOM05D003078 ORTHO05D003545 3.2e-10 67.8 38 73.7
Ca_26476_v3 Cicer arietinum L. HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
ClCG06G018230 Citrullus lanatus HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
Ciclev10017847m.g Citrus clementina HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 76.3
MELO3C026175.2 Cucumis melo HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
CsaV3_1G000200 Cucumis sativus L. HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
Dinv11216 Davidia involucrata HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
Duzib084G0449 Durio zibethinus HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
FvH4_6g54160 Fragaria vesca HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
FAN09G4122 Fragaria x ananassa HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
FAN14G1125 Fragaria x ananassa HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
MD09G1004800 Malus domestica HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
MD17G1008800 Malus domestica HOM05D003078 ORTHO05D003545 4.1e-10 67.4 38 78.9
HanXRQChr09g0273591 Helianthus annuus HOM05D003078 ORTHO05D003545 5.4e-10 67.0 38 78.9
Hma1.2p1_0093F.1_g047030 Hydrangea macrophylla HOM05D003078 ORTHO05D003545 5.4e-10 67.0 38 78.9
Manes.04G091700 Manihot esculenta HOM05D003078 ORTHO05D003545 5.4e-10 67.0 38 76.3
Nn4g22188 Nelumbo nucifera HOM05D003078 ORTHO05D003545 5.4e-10 67.0 38 76.3
Oeu019022.1 Olea europaea HOM05D000396 ORTHO05D000116 5.4e-10 67.0 43 69.8
Rhsim08G0195100 Rhododendron simsii HOM05D003078 ORTHO05D003545 5.4e-10 67.0 38 78.9
vmacro19160 Vaccinium macrocarpon HOM05D003078 ORTHO05D003545 5.4e-10 67.0 38 78.9
BraA01t02432Z Brassica rapa HOM05D003078 ORTHO05D003545 7.1e-10 66.6 38 76.3
MBI11_g37086_MAGBIO Magnolia biondii HOM05D003078 ORTHO05D003545 7.1e-10 66.6 38 76.3
Sopen03g028920 Solanum pennellii HOM05D003078 ORTHO05D003545 7.1e-10 66.6 38 78.9
VMungo0464G2149 Vigna mungo HOM05D003078 ORTHO05D003545 7.1e-10 66.6 38 76.3
CAN.G637.14 Capsicum annuum HOM05D003078 ORTHO05D003545 9.2e-10 66.2 38 78.9
Manes.06G124900 Manihot esculenta HOM05D003078 ORTHO05D003545 9.2e-10 66.2 38 78.9
RcHm_v2.0_Chr2g0176331 Rosa chinensis HOM05D003078 ORTHO05D003545 9.2e-10 66.2 38 76.3
Hund10073 Selenicereus undatus HOM05D003078 ORTHO05D003545 9.2e-10 66.2 38 76.3
Solyc06g072320.4 Solanum lycopersicum HOM05D003078 ORTHO05D003545 9.2e-10 66.2 38 78.9
Sopen06g028690 Solanum pennellii HOM05D003078 ORTHO05D003545 9.2e-10 66.2 38 78.9
PGSC0003DMG400026961 Solanum tuberosum HOM05D003078 ORTHO05D003545 9.2e-10 66.2 38 78.9
DCAR_026256 Daucus carota HOM05D003078 ORTHO05D003545 1.2e-09 65.9 38 78.9
Potri.015G103800 Populus trichocarpa HOM05D003078 ORTHO05D003545 1.2e-09 65.9 38 71.1
SGA_v2.0_scaffold40G15635 Striga asiatica HOM05D003078 ORTHO05D003545 1.2e-09 65.9 38 73.7
unitig_61.g26379 Utricularia gibba HOM05D003078 ORTHO05D003545 1.2e-09 65.9 38 76.3
Hund02483 Selenicereus undatus HOM05D003078 ORTHO05D003545 1.6e-09 65.5 38 73.7
Aqoxy3G01793 Aquilegia oxysepala HOM05D003078 ORTHO05D003545 2.1e-09 65.1 38 73.7
Sabra15G0123600 Salix brachista HOM05D003078 ORTHO05D003545 2.1e-09 65.1 37 70.3
Actinidia18320 Actinidia chinensis HOM05D003078 ORTHO05D003545 2.7e-09 64.7 38 73.7
ECA246G2584 Erigeron canadensis HOM05D003078 ORTHO05D003545 2.7e-09 64.7 38 76.3
GSVIVG01033008001 Vitis vinifera HOM05D003078 ORTHO05D003545 2.7e-09 64.7 38 76.3
Lj9C484T8 Lonicera japonica HOM05D003078 ORTHO05D003545 3.5e-09 64.3 38 78.9
Phvul.004G071100 Phaseolus vulgaris HOM05D003078 ORTHO05D003545 3.5e-09 64.3 38 73.7
Zm00001eb363730 Zea mays HOM05D003078 ORTHO05D003545 3.5e-09 64.3 38 73.7
CDE06G1270 Ceratophyllum demersum HOM05D003078 ORTHO05D003545 4.6e-09 63.9 38 73.7
Peaxi162Scf00358g00620 Petunia axillaris HOM05D003078 ORTHO05D003545 4.6e-09 63.9 37 78.4
Zm00001eb170230 Zea mays HOM05D003078 ORTHO05D003545 4.6e-09 63.9 38 71.1
Ah.11g046580 Amaranthus hybridus HOM05D003078 ORTHO05D003545 6.0e-09 63.5 35 77.1
ECA246G0036 Erigeron canadensis HOM05D003078 ORTHO05D003545 6.0e-09 63.5 38 73.7
Sabra15G0123500 Salix brachista HOM05D003078 ORTHO05D003545 6.0e-09 63.5 38 65.8
SGA_v2.0_scaffold74G24702 Striga asiatica HOM05D003078 ORTHO05D003545 6.0e-09 63.5 38 71.1
CANSAT64G2804 Cannabis sativa HOM05D003078 ORTHO05D003545 7.8e-09 63.2 38 68.4
Os01g0928600 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 7.8e-09 63.2 38 73.7
Sc04g0000300 Simmondsia chinensis HOM05D003078 ORTHO05D003545 7.8e-09 63.2 38 76.3
CDE02G2903 Ceratophyllum demersum HOM05D003078 ORTHO05D003545 1.0e-08 62.8 38 71.1
Zm00001eb170240 Zea mays HOM05D003078 ORTHO05D003545 1.0e-08 62.8 38 68.4
CAN.G27.68 Capsicum annuum HOM05D003078 ORTHO05D003545 1.3e-08 62.4 38 71.1
unitig_0.g1258 Utricularia gibba HOM05D003078 ORTHO05D003545 1.3e-08 62.4 38 73.7
HPP92_001930 Vanilla planifolia HOM05D003078 ORTHO05D003545 1.3e-08 62.4 38 68.4
Zm00001eb113010 Zea mays HOM05D003078 ORTHO05D003545 2.3e-08 61.6 38 68.4
ATR0661G050 Amborella trichopoda HOM05D003078 ORTHO05D003545 3.0e-08 61.2 38 71.1
DCAR_021415 Daucus carota HOM05D003078 ORTHO05D003545 3.0e-08 61.2 38 73.7
Mapoly0006s0093 Marchantia polymorpha HOM05D003078 ORTHO05D003545 3.0e-08 61.2 39 71.8
Nn3g16315 Nelumbo nucifera HOM05D003078 ORTHO05D003545 5.1e-08 60.5 36 75.0
Oeu030644.1 Olea europaea HOM05D003078 ORTHO05D003545 6.6e-08 60.1 38 71.1
SGA_v2.0_scaffold72G24182 Striga asiatica HOM05D003078 ORTHO05D003545 1.9e-07 58.5 38 65.8
PSO229G0106 Papaver somniferum HOM05D003078 ORTHO05D003545 2.5e-07 58.2 38 63.2
Sopen06g009940 Solanum pennellii HOM05D003078 ORTHO05D003545 2.5e-07 58.2 38 65.8
Cc04_g09460 Coffea canephora HOM05D003078 ORTHO05D003545 3.3e-07 57.8 38 65.8
PSO675G8470 Papaver somniferum HOM05D003078 ORTHO05D003545 3.3e-07 57.8 38 63.2
Solyc06g030590.3 Solanum lycopersicum HOM05D003078 ORTHO05D003545 3.3e-07 57.8 37 67.6
PGSC0003DMG400017785 Solanum tuberosum HOM05D003078 ORTHO05D003545 3.3e-07 57.8 38 65.8
Sed0009874 Sechium edule HOM05D003078 ORTHO05D003545 4.3e-07 57.4 39 66.7
PSO229G0086 Papaver somniferum HOM05D003078 ORTHO05D003545 5.6e-07 57.0 38 65.8
PSO675G3711 Papaver somniferum HOM05D003078 ORTHO05D003545 5.6e-07 57.0 38 65.8
MD04G1167400 Malus domestica HOM05D003078 ORTHO05D003545 7.3e-07 56.6 32 81.2
SMO347G0225 Selaginella moellendorffii HOM05D003078 ORTHO05D003545 9.5e-07 56.2 38 63.2
PSO675G1150 Papaver somniferum HOM05D003078 ORTHO05D003545 1.2e-06 55.8 38 60.5
CBR_g8908 Chara braunii HOM05D003078 ORTHO05D003545 2.1e-06 55.1 38 63.2
BcaC01g02376 Brassica carinata HOM05D003078 ORTHO05D003545 6.2e-06 53.5 38 60.5
A06p27920 Brassica napus HOM05D003078 ORTHO05D003545 6.2e-06 53.5 38 60.5
C03p65950 Brassica napus HOM05D003078 ORTHO05D003545 6.2e-06 53.5 38 60.5
BolC3t18853H Brassica oleracea HOM05D003078 ORTHO05D003545 6.2e-06 53.5 38 60.5
BraA06t25733Z Brassica rapa HOM05D003078 ORTHO05D003545 6.2e-06 53.5 38 60.5


User provided reference genes

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