Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 0.0e+00 1721.1 891 100.0
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 0.0e+00 1629.4 886 94.8
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 0.0e+00 1449.9 895 85.5
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 0.0e+00 1333.9 895 77.1
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 0.0e+00 1297.7 897 76.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 0.0e+00 1212.2 901 70.8
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1192.2 902 70.4
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 0.0e+00 1190.3 901 70.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 0.0e+00 1189.5 901 70.4
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1188.3 904 70.5
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 0.0e+00 1176.0 925 68.9
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 0.0e+00 1120.1 905 69.4
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 2.2e-291 1005.7 894 63.2
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 2.6e-244 849.4 742 63.3
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.2e-243 846.3 555 78.2
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.3e-240 836.3 760 61.6
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 4.6e-233 812.0 769 60.5
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.4e-226 790.4 766 59.5
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.2e-211 740.0 949 48.1
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.5e-207 727.2 926 48.3
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.2e-204 717.6 921 48.8
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 2.0e-204 716.8 921 47.8
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 4.9e-203 712.2 920 48.3
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 7.1e-202 708.4 921 47.2
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.1e-202 708.4 944 46.7
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 6.6e-200 701.8 921 47.3
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 2.9e-195 686.4 698 56.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 9.3e-194 681.4 921 46.5
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 4.6e-193 679.1 930 45.8
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.3e-192 676.8 954 45.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 1.9e-191 673.7 559 64.8
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 3.3e-191 672.9 941 46.1
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.6e-190 670.6 919 45.6
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.8e-189 667.2 950 46.1
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 4.0e-189 666.0 939 44.9
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 4.5e-188 662.5 944 45.1
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.7e-187 660.6 817 49.4
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.9e-187 659.8 1016 43.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 4.9e-187 659.1 948 44.7
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 6.0e-185 652.1 955 44.9
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.3e-184 651.0 920 45.2
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.3e-182 644.4 927 44.2
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.8e-182 643.3 932 44.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.7e-182 642.9 926 44.3
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.8e-181 640.6 926 43.7
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 2.0e-180 637.1 834 49.8
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 4.5e-180 636.0 911 45.0
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.1e-178 631.3 994 42.2
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.2e-178 629.8 991 42.5
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 7.1e-178 628.6 951 43.5
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.6e-177 627.5 953 42.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.6e-177 627.5 959 42.6
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 6.1e-177 625.5 931 44.6
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 3.9e-176 622.9 943 43.7
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 3.9e-176 622.9 903 44.4
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 3.9e-176 622.9 939 44.1
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 2.5e-175 620.2 932 44.3
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.3e-175 619.4 994 41.3
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.7e-175 619.0 933 43.7
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.6e-174 617.5 996 41.6
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 4.8e-174 615.9 938 43.0
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 5.3e-173 612.5 817 47.2
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-171 608.2 1017 40.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 2.2e-171 607.1 867 45.4
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.9e-171 606.7 997 41.3
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 3.6e-169 599.7 953 42.3
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.9e-169 598.6 920 43.4
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.3e-168 597.0 934 41.8
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 2.5e-167 593.6 866 46.2
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 4.3e-167 592.8 901 43.3
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 3.7e-166 589.7 797 46.2
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.2e-164 584.7 933 42.1
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.9e-163 580.1 915 42.0
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 3.9e-160 569.7 903 42.7
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.6e-159 567.0 945 40.3
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.7e-158 564.3 958 39.6
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.7e-158 563.1 914 41.2
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 3.1e-157 560.1 918 41.0
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 3.1e-157 560.1 950 39.9
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 4.5e-156 556.2 927 41.1
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.0e-155 555.1 919 40.8
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 3.8e-155 553.1 921 41.2
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 5.0e-155 552.7 901 40.8
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.0e-155 552.7 739 45.9
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.2e-154 549.7 926 40.2
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 2.1e-153 547.4 924 39.7
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.2e-150 537.3 894 41.2
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 6.3e-150 535.8 1081 36.7
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.4e-149 534.6 786 46.1
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 4.1e-149 533.1 929 39.7
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.0e-147 528.5 950 39.7
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.3e-147 528.1 956 38.8
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 4.2e-146 523.1 921 39.5
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 3.6e-145 520.0 993 38.8
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 7.5e-143 512.3 922 38.5
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.7e-142 511.1 990 37.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 8.5e-139 498.8 909 39.2
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 9.4e-138 495.4 902 39.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 3.6e-137 493.4 934 36.7
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 8.0e-137 492.3 898 38.9
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 4.0e-136 490.0 1012 36.6
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 3.4e-135 486.9 911 38.7
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 8.3e-134 482.3 1011 36.2
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.1e-133 481.9 888 38.2
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.5e-132 476.9 785 41.3
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.0e-131 475.3 329 78.4
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.5e-130 470.7 903 36.9
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 5.6e-130 469.5 963 37.4
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.0e-128 465.3 1008 36.6
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 9.2e-125 452.2 1044 33.3
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.0e-123 448.7 943 35.2
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.1e-122 445.3 992 35.6
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.6e-121 440.3 547 47.2
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.4e-120 438.3 575 45.6
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.8e-120 438.0 578 45.0
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 4.4e-119 433.3 553 47.9
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.4e-119 433.3 778 39.6
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 9.2e-117 425.6 885 35.8
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.1e-108 397.9 742 36.5
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.0e-107 394.0 701 37.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 5.1e-107 393.3 743 36.9
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 4.4e-103 380.2 833 36.6
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.7e-102 378.3 1013 32.3
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.1e-96 357.5 594 42.4
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 3.5e-92 344.0 527 40.6
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 6.0e-92 343.2 470 45.7
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.4e-88 331.3 366 51.1
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.8e-87 326.6 1001 29.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.8e-86 323.9 999 29.4
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.5e-74 285.4 521 40.1
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-73 281.6 1064 26.0
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 6.2e-73 280.0 339 49.6
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 8.4e-70 269.6 1019 28.4
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 2.1e-68 265.0 318 46.9
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.4e-61 242.3 591 34.7
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 6.9e-56 223.4 254 50.4
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 6.5e-54 216.9 247 49.0
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 4.2e-53 214.2 639 30.0
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.2e-53 213.4 289 43.3
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.4e-45 189.1 236 41.5
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 3.0e-43 181.4 295 43.4
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.8e-40 172.2 317 40.4
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 9.1e-40 169.9 317 40.4
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 5.9e-39 167.2 393 33.6
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.3e-35 155.2 184 49.5
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 5.9e-31 140.6 488 32.0
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 5.9e-31 140.6 342 35.4
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.9e-29 135.6 310 36.5
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.5e-29 135.2 230 40.4
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-23 116.3 145 45.5
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.6e-23 115.9 201 37.8
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.7e-22 112.5 164 41.5
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 8.5e-22 110.2 269 39.4
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.7e-20 105.1 192 39.6
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 5.2e-19 100.9 146 43.2
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.8e-19 100.1 225 35.6
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.8e-16 92.4 162 44.4
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 3.1e-16 91.7 96 53.1
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.1e-16 91.3 109 49.5
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-15 89.4 113 41.6
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 2.3e-14 85.5 162 38.3
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 3.8e-14 84.7 160 39.4
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 5.6e-13 80.9 220 31.4
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 1.0e-11 76.6 74 51.4
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-11 75.5 117 37.6
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 3.0e-11 75.1 164 33.5
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 4.0e-11 74.7 73 50.7
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 9.8e-10 70.1 175 32.6
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 9.8e-10 70.1 49 61.2
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.2e-09 68.9 98 38.8
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 2.9e-09 68.6 73 52.1
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.8e-08 65.9 193 29.0
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.8e-08 65.9 115 40.0
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-07 63.2 74 43.2
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 7.8e-07 60.5 92 32.6
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 7.8e-07 60.5 174 31.6


User provided reference genes

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