Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.9e-215 751.5 356 100.0
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.0e-196 689.9 386 86.0
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.6e-187 658.7 388 81.4
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 4.5e-184 647.9 388 80.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.7e-183 646.0 389 79.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 8.6e-183 643.7 389 79.7
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.6e-181 639.4 389 79.9
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.8e-181 638.6 388 79.6
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.4e-180 636.3 388 79.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 4.0e-180 634.8 388 79.6
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.2e-179 633.3 394 78.2
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.0e-179 632.5 381 80.1
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 7.5e-179 630.6 392 78.8
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.7e-178 629.4 367 83.1
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 2.2e-178 629.0 383 79.6
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.2e-178 629.0 390 79.2
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.9e-178 628.6 393 78.4
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 8.3e-178 627.1 394 78.2
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 8.3e-178 627.1 394 78.2
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-177 626.7 390 79.0
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.7e-176 622.1 396 77.3
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.2e-170 602.4 394 76.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 2.4e-169 599.0 309 89.6
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 5.4e-169 597.8 309 89.6
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.2e-168 596.7 392 75.0
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 4.6e-168 594.7 402 73.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.0e-167 593.6 309 88.7
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.7e-167 592.8 371 78.4
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.3e-167 592.4 309 88.7
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 3.0e-167 592.0 362 79.8
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 3.0e-167 592.0 309 88.7
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 3.0e-167 592.0 309 87.7
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 5.1e-167 591.3 382 75.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 6.6e-167 590.9 349 81.4
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.6e-167 590.5 382 75.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.6e-167 590.5 382 75.9
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.5e-166 589.7 310 88.7
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.5e-166 589.0 302 90.4
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.5e-166 589.0 302 90.4
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.5e-166 587.0 309 87.7
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.6e-165 586.3 309 87.4
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.6e-165 586.3 365 77.0
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.6e-165 586.3 309 87.7
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.1e-165 585.9 309 87.1
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.1e-165 585.9 310 88.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.8e-165 585.5 297 90.6
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.8e-165 585.5 297 90.6
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.6e-165 585.1 309 87.4
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.6e-165 585.1 297 89.9
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.6e-165 585.1 310 87.1
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 4.7e-165 584.7 310 88.4
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 4.7e-165 584.7 309 87.4
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 6.2e-165 584.3 311 86.5
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.1e-164 583.6 309 87.4
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.4e-164 583.2 309 88.0
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.4e-164 583.2 390 74.4
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.8e-164 582.8 330 82.1
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.3e-164 582.4 304 88.8
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.3e-164 582.4 304 89.5
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 2.3e-164 582.4 313 86.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 4.0e-164 581.6 310 87.4
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.2e-164 581.3 310 87.4
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 5.2e-164 581.3 306 88.2
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 8.9e-164 580.5 311 86.5
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 8.9e-164 580.5 310 87.4
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.2e-163 580.1 391 73.4
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 2.0e-163 579.3 370 75.1
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 2.6e-163 578.9 300 89.0
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.6e-163 578.9 310 87.4
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 5.8e-163 577.8 310 86.5
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 5.8e-163 577.8 303 87.1
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.6e-163 577.4 310 87.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 7.6e-163 577.4 309 86.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 9.9e-163 577.0 364 78.6
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 9.9e-163 577.0 309 86.7
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.3e-162 576.6 307 87.9
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.3e-162 576.6 309 86.4
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.3e-162 576.6 326 83.1
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.7e-162 575.1 310 85.8
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 4.9e-162 574.7 310 86.1
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 6.4e-162 574.3 367 77.7
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.9e-161 572.8 313 85.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.4e-161 572.4 309 86.1
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 4.1e-161 571.6 314 85.7
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 5.4e-161 571.2 309 85.4
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 7.1e-161 570.9 305 87.5
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.1e-161 570.9 310 86.5
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.2e-160 570.1 314 85.7
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.1e-160 569.3 312 84.6
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.1e-160 569.3 337 80.7
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 2.7e-160 568.9 308 85.7
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 3.5e-160 568.5 382 73.8
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.7e-159 566.2 303 85.1
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.9e-158 562.8 363 76.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 9.6e-158 560.5 312 84.6
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 9.6e-158 560.5 318 82.4
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.6e-157 559.7 312 83.7
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 4.7e-157 558.1 310 83.5
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 6.2e-157 557.8 309 85.1
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.1e-157 557.4 326 80.4
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 8.1e-157 557.4 369 74.3
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.1e-156 555.4 340 78.8
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 4.0e-156 555.1 316 83.2
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.2e-155 553.5 310 83.5
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.6e-155 552.4 292 87.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.3e-151 540.0 299 85.3
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.3e-151 539.3 287 88.5
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.8e-149 531.6 302 81.8
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.8e-149 531.6 286 86.4
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 9.0e-148 527.3 307 81.8
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 9.0e-148 527.3 300 79.7
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.9e-145 519.6 305 78.4
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 7.9e-144 514.2 306 77.1
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.0e-143 513.8 315 80.0
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.7e-143 513.1 309 79.6
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.7e-143 513.1 306 77.1
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.1e-140 503.8 309 76.7
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 4.0e-140 501.9 295 78.3
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 5.3e-140 501.5 516 53.3
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-138 496.9 243 92.6
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.8e-138 495.4 468 56.6
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 4.2e-137 491.9 463 57.0
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.3e-122 443.7 320 65.6
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.1e-121 440.7 233 86.3
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 2.3e-119 433.0 326 62.0
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.5e-118 430.3 302 65.6
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 7.7e-115 417.9 325 66.8
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.1e-112 408.3 356 61.0
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-104 384.0 227 79.7
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.6e-104 383.6 242 76.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 7.7e-99 364.8 233 77.3
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.0e-98 364.4 219 79.5
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.0e-98 362.1 314 56.4
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 8.2e-93 344.7 303 55.4
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 5.2e-87 325.5 288 53.5
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-85 320.9 199 76.4
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.0e-79 299.3 190 74.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-65 254.6 127 90.6
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 2.8e-64 250.0 295 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.1e-63 246.5 323 42.4
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.1e-63 246.5 308 42.5
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 4.0e-63 246.1 332 39.5
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.9e-63 245.0 314 41.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.9e-57 227.3 322 38.5
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 4.9e-53 212.6 177 62.7
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.9e-52 210.7 320 38.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 3.9e-50 203.0 247 41.3
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.0e-46 190.7 112 83.9
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.6e-43 181.0 155 60.6
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.2e-27 128.3 90 71.1
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.5e-25 121.3 163 46.0
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 3.1e-23 113.6 55 87.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 2.4e-20 104.0 62 82.3
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.1e-16 90.9 93 59.1
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 1.5e-14 84.7 105 47.6
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.5e-14 83.2 49 75.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 3.0e-10 70.5 33 81.8
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 1.3e-08 65.1 135 34.1
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.1e-08 64.3 34 73.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 3.4e-06 57.0 31 74.2


User provided reference genes

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