Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 4.2e-228 794.3 384 100.0
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.3e-216 756.1 384 94.8
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 4.7e-211 737.6 384 93.2
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 1.4e-202 709.5 376 90.4
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 3.6e-195 684.9 373 87.7
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 4.1e-191 671.4 380 85.5
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 4.1e-191 671.4 375 86.9
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 4.7e-187 657.9 373 85.5
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 4.0e-186 654.8 371 85.7
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.4e-167 592.4 384 76.3
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 2.7e-166 589.0 337 84.9
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 6.5e-160 567.8 380 74.2
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 7.1e-159 564.3 380 74.5
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 8.7e-157 557.4 390 72.8
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 2.5e-156 555.8 391 71.6
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 5.3e-154 548.1 382 71.2
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 1.5e-153 546.6 378 70.9
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 2.6e-153 545.8 378 72.5
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 4.5e-153 545.0 380 72.4
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 3.2e-151 538.9 389 69.9
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 1.6e-150 536.6 379 69.9
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.1e-150 536.2 379 69.9
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 3.5e-150 535.4 378 71.2
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 7.9e-150 534.3 379 70.4
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 7.9e-150 534.3 384 70.6
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 1.0e-149 533.9 384 70.6
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 2.3e-149 532.7 380 69.5
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 3.3e-148 528.9 375 70.1
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 7.4e-148 527.7 375 70.7
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 2.2e-147 526.2 375 70.4
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 6.3e-147 524.6 382 68.6
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 3.8e-144 515.4 369 71.0
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.4e-143 513.5 378 68.3
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 1.9e-143 513.1 384 67.4
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.9e-143 513.1 375 67.7
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.2e-142 510.4 383 65.3
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.2e-142 510.4 382 66.8
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 3.6e-142 508.8 378 68.3
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 3.6e-142 508.8 374 69.3
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 6.1e-142 508.1 366 69.9
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.0e-141 507.3 373 67.8
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 2.3e-141 506.1 380 66.8
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 8.8e-141 504.2 378 69.0
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 2.5e-140 502.7 387 66.7
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 2.5e-140 502.7 372 67.5
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 1.3e-139 500.4 375 66.1
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 1.3e-139 500.4 381 65.9
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 2.2e-139 499.6 394 64.7
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 2.2e-139 499.6 375 67.2
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 4.8e-139 498.4 375 65.6
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.4e-138 496.9 381 66.1
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 3.4e-137 492.3 380 67.6
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 2.9e-136 489.2 378 65.9
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 8.5e-136 487.6 373 65.1
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 1.4e-135 486.9 356 68.0
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 3.2e-135 485.7 390 66.4
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 3.2e-135 485.7 379 65.7
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 7.2e-135 484.6 373 64.9
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 4.7e-134 481.9 378 65.3
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 5.1e-133 478.4 378 65.1
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.6e-132 476.1 379 64.4
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 5.7e-132 474.9 412 59.5
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 2.2e-131 473.0 373 66.0
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 3.7e-131 472.2 368 63.6
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.8e-131 471.9 373 65.4
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.1e-130 468.8 377 64.5
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 2.6e-129 466.1 346 68.2
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 3.5e-129 465.7 359 64.9
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 3.5e-129 465.7 378 60.8
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 2.9e-128 462.6 362 64.1
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 1.9e-127 459.9 394 60.2
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 3.6e-126 455.7 368 62.5
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 5.9e-121 438.3 371 60.9
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 2.7e-118 429.5 370 62.2
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 4.4e-116 422.2 311 68.5
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.1e-114 417.5 327 63.9
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 6.5e-112 408.3 308 68.2
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 7.2e-111 404.8 310 65.5
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 1.8e-106 390.2 450 48.2
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.3e-104 384.0 302 64.2
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 3.0e-101 372.9 389 52.2
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 3.7e-99 365.9 377 52.0
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 5.9e-97 358.6 354 53.7
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 7.8e-97 358.2 465 44.7
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 4.7e-94 349.0 288 61.5
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.4e-93 347.4 325 58.2
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 5.2e-93 345.5 288 62.2
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 8.3e-91 338.2 193 86.5
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.1e-90 337.8 371 54.2
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 3.7e-83 312.8 547 37.8
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.1e-79 301.2 277 57.0
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 9.5e-79 298.1 373 49.1
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 3.8e-75 286.2 172 82.0
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 3.5e-73 279.6 241 59.3
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 5.1e-72 275.8 280 55.0
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.4e-69 267.7 265 54.7
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 3.8e-67 259.6 386 40.7
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 5.4e-66 255.8 416 38.2
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 6.0e-65 252.3 159 75.5
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 1.0e-64 251.5 291 48.8
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 3.9e-64 249.6 265 52.1
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.8e-62 243.4 347 44.4
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 7.6e-60 235.3 249 53.8
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 1.3e-54 218.0 212 55.7
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 7.1e-50 202.2 403 37.7
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 1.7e-43 181.0 196 49.0
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.9e-42 177.6 393 33.1
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 6.0e-41 172.6 111 73.9
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 3.3e-39 166.8 114 71.1
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 1.8e-29 134.4 308 33.1
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.8e-29 134.4 175 41.7
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 1.8e-29 134.4 82 75.6
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.6e-28 130.6 141 49.6
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 3.4e-28 130.2 89 70.8
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 7.7e-28 129.0 80 75.0
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.5e-26 124.0 95 66.3
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.2e-25 121.7 80 71.2
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 6.9e-21 105.9 67 79.1
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 8.5e-19 99.0 62 69.4
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 3.6e-17 93.6 62 72.6
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.8e-14 83.2 64 65.6
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.1e-13 82.0 55 63.6
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.1e-13 82.0 55 63.6
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 7.7e-12 75.9 120 38.3
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.3e-11 75.1 50 70.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 1.9e-10 71.2 85 43.5
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.6e-09 68.2 41 70.7
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.7e-09 67.4 46 63.0
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 2.6e-07 60.8 28 92.9
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 1.3e-06 58.5 73 45.2
PRCOL_00004583 Prasinoderma coloniale HOM05D000064 ORTHO05D025009 2.2e-06 57.8 374 22.2


User provided reference genes

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