Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 1.8e-99 365.9 183 100.0
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.6e-95 352.8 183 95.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 3.6e-92 341.7 183 92.3
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.8e-91 339.3 183 92.3
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 90.2
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 90.2
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 89.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 3.7e-89 331.6 183 88.5
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 8.3e-89 330.5 183 88.5
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 88.5
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 89.1
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 89.6
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 89.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 89.1
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 89.1
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 89.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 86.3
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 85.8
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.9e-85 319.3 179 87.2
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 85.8
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.2e-84 316.6 179 86.0
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.2e-84 316.6 179 86.0
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.2e-84 316.6 179 86.0
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 3.6e-84 315.1 179 86.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.8e-83 312.8 181 84.5
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.8e-83 312.8 181 84.5
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.8e-83 312.8 179 84.9
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 3.0e-83 312.0 179 84.4
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 82.3
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 84.0
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.5e-82 309.7 179 82.7
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.4e-82 308.5 179 84.4
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 82.3
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.3e-81 306.6 179 82.1
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.7e-81 306.2 179 82.7
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 2.2e-81 305.8 179 83.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.7e-81 305.1 179 83.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 3.7e-81 305.1 179 83.8
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 3.7e-81 305.1 179 82.1
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.9
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 6.3e-81 304.3 179 82.1
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.1e-80 303.5 179 82.7
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.4e-80 303.1 179 82.7
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.8e-80 302.8 179 82.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.8e-80 302.8 186 79.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 82.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 83.4
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 4.1e-80 301.6 179 82.1
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.1e-80 301.6 179 79.9
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.4e-80 301.2 179 82.1
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 5.4e-80 301.2 179 82.1
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 7.0e-80 300.8 179 82.1
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.2e-79 300.1 179 81.6
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 1.6e-79 299.7 179 82.1
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 2.0e-79 299.3 179 82.1
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.7e-79 298.9 179 81.6
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 3.5e-79 298.5 179 81.0
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 80.1
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 80.1
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.5e-79 298.1 181 80.1
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 4.5e-79 298.1 179 81.0
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.9e-79 297.7 179 82.1
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 5.9e-79 297.7 181 80.1
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 5.9e-79 297.7 179 81.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 79.6
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 79.6
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 79.0
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 7.8e-79 297.4 179 81.0
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.0e-78 297.0 179 81.0
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.0e-78 297.0 179 81.0
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.3e-78 296.6 179 80.4
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 80.1
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.3e-78 296.6 179 82.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.3e-78 295.8 179 80.4
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.9e-78 295.4 179 79.9
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 79.6
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 79.0
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 76.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 76.8
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.8e-78 295.0 179 81.6
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 5.0e-78 294.7 181 78.5
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 8.6e-78 293.9 181 80.1
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.6e-78 293.9 181 76.8
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 78.5
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 77.9
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 79.0
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 78.5
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 5.6e-77 291.2 179 79.9
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 78.5
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 78.5
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 78.5
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 78.5
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.2e-76 290.0 179 78.2
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 78.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 78.5
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.8e-76 288.9 181 77.9
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 77.9
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.7e-76 288.1 181 77.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.4e-75 286.6 181 77.3
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.8e-75 286.2 179 78.8
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.8e-75 286.2 182 76.9
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.3e-75 285.8 179 76.0
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 5.2e-75 284.6 186 75.3
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.7e-73 279.6 179 74.9
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.2e-73 279.3 182 74.7
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.9e-73 278.9 179 74.9
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 4.9e-73 278.1 181 75.1
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 1.8e-72 276.2 182 74.2
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 2.4e-72 275.8 178 77.0
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 7.0e-72 274.2 179 73.7
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.6e-71 273.1 182 72.5
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.6e-71 271.6 187 72.7
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.3e-70 270.0 183 70.5
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.9e-70 268.5 181 70.7
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.1e-69 266.9 140 92.9
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.5e-69 266.5 181 68.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.9e-69 266.2 226 61.9
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.6e-68 263.1 182 69.8
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.4e-67 260.0 146 85.6
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.3e-67 259.2 179 73.2
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 6.8e-67 257.7 155 80.6
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 4.4e-66 255.0 181 66.3
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 5.8e-66 254.6 215 61.4
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.8e-66 254.6 155 79.4
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 4.1e-64 248.4 148 82.4
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.6e-63 246.5 181 63.5
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 6.0e-63 244.6 179 69.8
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 7.3e-61 237.7 190 66.8
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 2.3e-59 232.6 179 65.4
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.9e-57 225.7 179 65.4
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.6e-55 219.9 179 62.6
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 2.1e-55 219.5 158 70.3
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.3e-54 216.9 136 74.3
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 5.6e-53 211.5 178 64.6
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 2.8e-52 209.1 155 68.4
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 8.4e-49 197.6 179 59.2
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.2e-48 195.7 175 62.3
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.1e-48 195.3 148 64.2
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 9.2e-48 194.1 158 65.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.0e-46 189.1 148 65.5
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 5.1e-46 188.3 106 85.8
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.5e-45 186.8 98 92.9
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 5.6e-45 184.9 186 48.4
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.5e-42 176.8 98 86.7
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.2e-41 172.9 96 87.5
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.9e-41 172.6 95 86.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 2.4e-40 169.5 96 83.3
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 8.7e-38 161.0 99 78.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.5e-37 160.2 146 55.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 9.0e-35 151.0 134 59.0
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 9.0e-35 151.0 107 70.1
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.2e-28 128.3 81 76.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.8e-27 126.7 99 63.6
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.8e-27 126.7 76 78.9
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 4.6e-23 112.1 81 65.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 6.0e-23 111.7 106 59.4
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.5e-21 107.1 189 43.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.6e-20 103.6 68 67.6
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.5e-16 88.6 52 86.5
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 7.9e-15 84.7 106 48.1
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-11 74.3 183 35.0
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 2.5e-08 63.2 81 46.9
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.6e-07 60.5 37 67.6


User provided reference genes

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