Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 2040.8 1039 100.0
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1985.7 1039 97.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1953.3 1039 95.4
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1898.6 1040 93.3
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1896.7 1040 92.8
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1891.3 1039 92.7
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1851.6 1043 90.9
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1847.4 1046 90.7
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1844.3 1044 90.4
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1837.4 1047 89.9
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1835.5 1047 89.8
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1828.5 1050 89.6
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1828.5 1050 89.6
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1820.1 1045 89.7
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1819.7 1047 90.0
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1819.3 1047 89.7
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1754.2 1041 85.7
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1597.8 1052 77.9
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1596.3 1044 77.6
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1582.8 1055 77.3
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1580.8 1051 76.9
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1580.1 1026 77.5
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1578.1 1052 76.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1577.0 1048 77.3
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1575.8 1048 76.4
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1575.8 1051 77.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1573.5 1053 75.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1573.5 1043 76.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1572.4 1055 75.8
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1569.7 1042 76.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1567.0 1053 75.5
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1565.8 1055 76.2
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1044 76.6
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1053 75.6
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1563.9 1042 77.0
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1563.1 1042 77.0
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1562.7 1055 76.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1027 77.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1559.7 1053 75.6
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1557.7 1053 75.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1045 76.1
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1042 75.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1552.7 1055 76.1
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1052 76.3
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1047 75.7
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1054 75.0
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1548.9 1054 75.3
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1545.0 1087 73.3
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1543.5 1054 75.1
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1543.1 1028 76.3
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1542.7 1052 75.1
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1541.6 1050 75.5
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1069 74.6
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1044 75.4
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1539.6 1063 75.2
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1537.3 1049 75.4
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1537.3 1051 74.9
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1535.4 1052 75.1
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1052 75.1
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1532.7 1054 74.7
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1532.3 1048 75.3
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1042 74.5
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1066 74.7
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1526.9 1046 73.6
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1525.8 1054 74.3
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1049 74.6
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1521.9 1050 73.3
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1521.9 1052 74.2
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1047 74.2
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1078 73.0
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1052 73.2
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1516.9 1055 73.5
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1516.9 1041 74.1
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1515.7 1055 73.3
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1051 74.4
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1511.9 1045 74.4
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1505.0 1039 73.6
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1501.5 1054 73.7
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1501.5 1036 73.6
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1090 71.5
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1499.2 1049 73.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1493.8 1052 73.6
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1492.6 1052 73.5
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1491.1 1040 73.8
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1048 73.4
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1489.6 1055 73.7
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1483.8 1145 67.8
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1483.0 1041 73.7
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1477.6 1031 72.9
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1476.5 1058 72.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1476.1 1096 70.6
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1475.3 1094 70.7
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1469.1 1035 72.6
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1467.2 1058 71.4
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1464.1 1026 72.4
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1444.1 1024 71.1
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1433.7 1049 70.1
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1425.2 1051 69.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1416.0 1061 69.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1412.9 1021 70.2
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1385.2 1025 67.9
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1359.7 1047 68.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1358.6 1043 69.3
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1322.4 923 71.6
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1292.7 1027 66.4
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1292.7 963 69.1
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1287.7 1052 65.4
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1280.0 1009 66.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1265.0 968 66.0
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1254.6 1035 63.9
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1251.5 1032 62.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1185.2 846 71.3
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1105.1 1023 57.8
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1094.7 1028 56.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.2e-301 1040.0 753 71.7
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 1.2e-301 1040.0 1021 53.8
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.9e-294 1016.1 1037 53.7
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 6.4e-287 991.1 708 70.1
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 3.5e-285 985.3 709 69.4
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-284 981.5 1012 53.6
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.5e-280 969.9 615 80.8
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.8e-266 922.5 964 54.3
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 3.8e-263 912.1 1034 50.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 4.3e-259 898.7 613 72.6
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-257 894.0 1040 50.0
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 7.6e-256 887.9 1048 50.1
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 8.5e-239 831.2 549 75.0
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 5.1e-228 795.4 481 83.0
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.5e-211 740.7 449 83.7
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 6.3e-202 708.8 383 94.5
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 8.6e-199 698.4 1034 42.8
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.6e-189 667.5 438 75.8
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 6.4e-186 655.6 538 69.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-184 651.0 1016 41.2
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.0e-179 634.0 400 77.0
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-174 617.8 482 66.8
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 7.8e-168 595.5 520 58.3
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 1.0e-167 595.1 1083 36.7
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.2e-160 571.6 462 64.5
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-142 510.4 374 69.8
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.6e-142 509.6 418 60.8
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-141 507.7 368 70.4
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-141 507.7 368 70.4
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.0e-136 489.6 373 68.6
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 2.5e-134 484.2 322 74.2
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.9e-129 468.0 565 48.8
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-121 441.4 655 42.0
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 4.2e-121 440.3 596 44.5
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 7.9e-120 436.0 1075 31.8
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.2e-107 395.6 290 67.2
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 4.5e-107 393.7 284 70.4
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.0e-91 341.7 195 84.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.2e-87 327.0 508 42.1
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.5e-86 325.5 289 60.9
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 4.3e-81 307.4 512 39.5
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.6e-70 271.6 402 43.5
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-69 269.2 421 42.8
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-64 252.3 237 59.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.4e-60 237.3 185 66.5
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 7.1e-60 236.9 136 86.0
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.9e-58 231.1 230 57.4
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.3e-57 227.6 298 45.3
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.2e-51 209.5 137 76.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-51 208.8 162 68.5
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 6.9e-47 193.7 126 75.4
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 2.1e-43 182.2 192 49.0
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 3.8e-37 161.4 143 62.2
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 4.6e-35 154.5 176 54.0
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.9e-34 151.4 213 41.8
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 3.7e-32 144.8 92 77.2
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.7e-32 144.8 91 79.1
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.8e-32 144.4 123 61.8
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 5.3e-31 141.0 253 38.3
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.5e-25 122.1 275 33.5
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.6e-14 85.5 55 76.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.4e-12 79.7 77 54.5
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.0e-10 73.6 50 76.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.9e-10 71.6 71 46.5
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 5.7e-09 67.8 83 43.4
Haze_26226 Corylus avellana HOM05D004243 ORTHO05D005018 9.1e-07 60.5 190 29.5
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 2.6e-06 58.9 62 48.4
Mapoly0073s0013 Marchantia polymorpha HOM05D004243 ORTHO05D005018 2.6e-06 58.9 184 27.7


User provided reference genes

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