Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 2598.5 1318 100.0
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 2481.4 1320 95.2
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 2404.8 1320 92.6
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 2359.7 1320 89.9
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 2348.2 1320 89.5
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 2273.0 1324 87.6
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 2268.0 1323 87.7
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 2262.6 1323 87.1
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 2261.9 1323 87.0
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 2149.8 1319 84.2
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 2114.0 1350 79.8
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 2073.1 1157 90.6
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1968.0 1320 75.5
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1657.1 1331 63.8
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1635.5 1333 63.2
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1618.2 1325 62.6
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1614.4 1330 62.5
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1613.2 1330 62.6
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1612.4 1330 62.7
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1607.8 1329 62.2
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1606.7 1330 62.0
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1606.7 1330 62.2
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1603.2 1330 61.9
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1598.2 1332 61.6
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1594.7 1332 62.2
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1591.2 1336 61.2
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1589.3 1336 61.1
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1587.8 1327 61.8
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1585.9 1336 61.0
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1585.9 1336 61.1
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1583.9 1336 60.9
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1582.8 1335 61.3
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1581.2 1334 61.0
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1576.2 1251 64.7
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1575.8 1329 60.6
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1569.7 1328 60.5
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1555.0 1336 60.5
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1550.0 1326 59.9
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1542.3 1327 59.8
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1539.2 1333 60.1
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1537.7 1324 59.8
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1533.1 1324 59.6
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1528.8 1325 59.1
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1528.5 1247 63.2
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1528.1 1337 59.5
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1527.7 1330 59.0
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1526.9 1330 60.1
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1519.2 1331 58.5
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1516.1 1334 59.0
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1506.5 1253 61.1
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1504.6 1323 59.3
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1503.8 1326 58.6
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1503.4 1329 58.7
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1500.7 1328 58.6
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1497.6 1330 58.0
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1495.7 1331 58.2
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1494.9 1327 58.0
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1494.6 1331 58.0
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1494.6 1346 57.4
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1492.6 1331 58.1
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1492.6 1327 58.3
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1492.6 1286 59.6
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1491.1 1330 58.1
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1486.5 1350 57.0
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1483.4 1331 57.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1479.9 1325 58.2
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1464.9 1336 57.0
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1456.8 1346 56.6
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1455.7 1351 56.5
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1452.2 1329 56.2
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1449.1 1340 57.6
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1444.9 1275 58.6
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1442.6 1267 59.0
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1442.6 1321 57.7
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1441.8 1331 56.7
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1431.4 1345 56.6
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1426.8 1248 59.1
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1414.1 1324 56.5
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1402.5 1099 65.7
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1391.3 1196 58.8
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1389.8 1319 55.6
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1388.2 1324 55.5
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1377.8 1326 54.9
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1368.6 1323 54.5
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1362.8 1101 63.1
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1322.8 1279 56.1
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1318.5 1113 60.5
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1310.8 1134 59.3
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1285.8 1346 50.6
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1280.8 1094 59.6
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1279.6 1350 50.7
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1253.4 1351 50.1
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1226.8 1564 46.0
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1224.9 1326 52.1
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1215.3 1335 49.2
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1100.1 945 58.9
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1093.2 903 60.9
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 8.9e-310 1067.4 1263 47.3
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 2.9e-308 1062.4 1328 46.5
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 2.6e-293 1012.7 844 62.0
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.0e-273 947.6 758 64.2
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 7.4e-240 835.1 1381 37.8
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 2.2e-228 797.0 1192 39.7
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 5.7e-224 782.3 1300 37.6
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 2.0e-221 773.9 1165 39.2
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.0e-204 718.4 806 49.5
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 1.9e-203 714.1 855 44.9
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.0e-151 542.3 1514 30.6
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 5.5e-134 483.4 459 56.6
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.2e-125 455.7 359 66.0
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 3.6e-117 427.6 378 57.1
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 1.4e-92 345.9 1385 26.9
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 1.8e-76 292.4 315 50.2
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 1.3e-71 276.2 1534 24.5
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 2.7e-64 251.9 251 50.6
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.9e-62 245.7 197 66.5
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 9.6e-62 243.4 1348 24.3
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 7.6e-59 233.8 305 41.0
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 3.2e-49 201.8 1360 25.1
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.2e-48 199.9 168 64.9
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 3.3e-38 165.2 131 66.4
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 3.7e-37 161.8 206 42.2
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 6.9e-36 157.5 228 38.6
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 7.6e-35 154.1 121 66.9
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 2.8e-29 135.6 290 36.9
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 3.4e-27 128.6 140 53.6


User provided reference genes

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