Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 1.8e-234 816.2 652 100.0
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 1.8e-202 709.9 632 94.0
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 1.7e-200 703.4 604 92.4
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 4.0e-194 682.2 657 90.0
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 3.2e-191 672.5 654 85.8
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 2.3e-189 666.4 630 88.4
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 6.8e-186 654.8 629 90.0
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 2.0e-185 653.3 631 86.8
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 7.5e-185 651.4 642 78.5
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 3.7e-184 649.0 651 85.7
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 5.4e-175 618.6 629 86.0
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 7.1e-175 618.2 629 85.1
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 3.5e-174 615.9 629 83.8
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 9.6e-172 607.8 629 84.7
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 8.1e-171 604.7 629 84.6
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 4.0e-170 602.4 667 81.3
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 4.0e-162 575.9 589 86.4
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.4e-159 566.6 653 82.2
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 7.9e-158 561.6 623 83.0
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.9e-135 487.3 314 83.1
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 9.3e-135 485.0 649 76.4
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 9.7e-132 474.9 694 71.6
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 6.9e-130 468.8 657 72.5
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 2.0e-129 467.2 683 71.0
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 2.6e-129 466.8 652 74.4
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 2.2e-128 463.8 652 74.5
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 8.5e-128 461.8 689 71.6
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.9e-127 460.7 695 68.2
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 7.2e-127 458.8 688 70.3
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.0e-125 454.9 664 71.2
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.0e-124 450.7 650 73.4
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 3.3e-124 449.9 688 61.9
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 3.3e-124 449.9 650 73.4
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 5.7e-124 449.1 617 76.8
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 7.4e-124 448.7 647 74.3
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 7.4e-124 448.7 653 73.5
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.3e-123 448.0 663 70.7
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 6.3e-123 445.7 667 69.6
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.4e-122 444.5 620 75.0
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-122 444.5 674 72.6
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.8e-122 444.1 664 69.6
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 6.9e-122 442.2 665 53.1
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.5e-121 441.0 647 71.1
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 2.0e-121 440.7 655 71.5
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.6e-121 440.3 647 70.9
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 1.0e-120 438.3 646 72.8
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-120 437.6 542 63.3
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 6.5e-120 435.6 647 70.8
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 8.5e-120 435.3 689 60.2
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.1e-119 434.9 660 70.8
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.4e-119 434.5 666 68.8
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.5e-119 433.7 613 75.5
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 4.2e-119 433.0 678 70.8
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.2e-118 431.4 655 74.0
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.6e-118 431.0 639 71.0
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.8e-117 427.6 631 73.5
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 3.9e-117 426.4 644 72.4
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 6.7e-117 425.6 669 71.9
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.1e-116 424.9 647 74.2
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.6e-116 423.7 587 74.8
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 4.4e-116 422.9 632 72.9
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 9.7e-116 421.8 633 73.0
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 1.7e-115 421.0 647 69.9
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.2e-115 420.6 633 73.0
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.1e-114 418.3 656 70.9
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 5.3e-114 416.0 643 72.2
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.0e-112 411.8 640 70.3
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.8e-112 409.8 663 68.8
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 5.0e-112 409.5 646 71.2
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.5e-111 407.9 679 66.0
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 7.2e-111 405.6 651 67.4
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 2.7e-110 403.7 679 69.4
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 3.6e-110 403.3 540 77.6
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 8.0e-110 402.1 527 77.4
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.0e-109 401.7 677 68.7
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 2.0e-108 397.5 642 69.0
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.7e-107 394.4 606 71.8
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.8e-107 393.7 749 53.3
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 6.3e-107 392.5 635 70.2
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 3.1e-106 390.2 608 71.5
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.1e-106 390.2 614 71.3
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 3.1e-106 390.2 628 69.4
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 3.1e-106 390.2 526 67.1
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.2e-105 388.3 476 83.4
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.3e-104 384.8 684 55.0
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 3.8e-104 383.3 619 72.4
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 5.0e-104 382.9 489 69.3
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 1.2e-102 378.3 723 49.1
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 3.6e-102 376.7 624 68.9
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 8.0e-102 375.6 597 72.4
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 8.0e-102 375.6 678 49.9
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.5e-100 371.3 684 55.0
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 5.7e-100 369.4 468 81.0
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 5.7e-100 369.4 646 68.7
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.3e-96 358.2 486 77.8
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.2e-95 353.6 635 43.3
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.2e-95 353.6 655 63.8
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 4.2e-95 353.2 769 43.6
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 3.0e-93 347.1 639 67.8
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 4.0e-93 346.7 640 67.7
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 2.8e-91 340.5 708 44.8
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 4.0e-85 320.1 791 43.2
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 2.0e-84 317.8 720 63.2
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.2e-76 292.0 466 75.8
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 2.0e-76 291.2 368 76.1
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 7.5e-76 289.3 606 63.7
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.7e-72 278.1 463 75.4
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.6e-70 271.6 450 76.4
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 2.1e-70 271.2 568 65.3
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 2.9e-67 260.8 423 77.8
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 9.5e-63 245.7 353 49.3
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 1.4e-61 241.9 438 73.1
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 5.2e-61 240.0 557 51.0
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.5e-60 238.4 148 79.7
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.4e-60 236.9 446 72.9
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.8e-60 236.5 453 73.3
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 3.8e-59 233.8 534 64.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 4.9e-59 233.4 408 43.9
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 3.5e-57 227.3 331 45.6
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-56 225.7 445 67.4
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.3e-56 225.3 342 48.2
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.1e-55 222.2 154 74.0
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 5.2e-53 213.4 428 43.9
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 5.4e-50 203.4 215 56.3
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.7e-48 198.4 135 71.1
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 1.1e-45 189.1 331 39.0
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 2.8e-38 164.5 122 65.6
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 4.8e-38 163.7 380 32.6
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.1e-34 152.5 412 58.0
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 5.5e-34 150.2 383 74.4
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 9.3e-34 149.4 365 45.5
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 9.3e-34 149.4 386 74.1
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-33 149.1 78 89.7
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 3.5e-33 147.5 188 46.8
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 3.5e-33 147.5 100 72.0
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 7.9e-33 146.4 79 87.3
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.3e-31 140.6 134 54.5
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.8e-28 130.2 136 52.2
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.6e-28 129.8 135 48.1
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 1.0e-27 129.4 135 48.1
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 1.3e-27 129.0 139 49.6
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-27 128.6 135 47.4
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.9e-27 127.1 446 58.1
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.9e-26 125.2 135 47.4
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.9e-26 125.2 135 47.4
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 2.7e-25 121.3 246 42.7
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.9e-24 117.5 88 59.1
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 5.1e-24 117.1 367 44.1
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 4.1e-21 107.5 75 62.7
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.0e-20 105.1 366 31.1
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 8.5e-19 99.8 256 37.1
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 1.1e-18 99.4 56 87.5
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.2e-18 96.7 53 71.7
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.0e-16 92.8 74 55.4
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.3e-16 92.4 105 55.2
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 2.3e-16 91.7 92 57.6
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.0e-16 91.3 62 69.4
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 2.5e-15 88.2 165 32.1
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 7.4e-15 86.7 234 38.9
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 2.2e-14 85.1 47 89.4
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 2.2e-14 85.1 47 89.4
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 2.2e-14 85.1 181 38.7
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-13 81.6 54 61.1
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-13 81.6 54 61.1
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-13 81.6 54 61.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-13 81.6 54 61.1
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-13 81.6 54 61.1
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-13 81.6 54 61.1
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-13 81.6 54 61.1
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.1e-13 80.9 150 41.3
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 5.3e-13 80.5 66 54.5
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.3e-13 80.5 54 59.3
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 9.1e-13 79.7 156 41.0
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 1.5e-12 79.0 51 78.4
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.2e-11 75.1 67 58.2
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.8e-11 74.3 80 60.0
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 8.5e-11 73.2 66 56.1
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.5e-10 71.6 80 58.8
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 7.2e-10 70.1 166 38.0
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 1.2e-09 69.3 39 84.6
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 5.1e-08 63.9 48 64.6
Gohir.D04G052700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.4e-07 60.8 52 57.7
Gorai.012G058900 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.4e-07 60.8 52 57.7
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.7e-07 60.5 79 49.4
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.7e-07 60.5 38 60.5


User provided reference genes

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