Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 0.0e+00 1679.8 1048 100.0
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 0.0e+00 1248.4 1077 74.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 0.0e+00 1200.3 1084 74.2
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 0.0e+00 1152.5 1080 67.8
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 0.0e+00 1103.6 1084 67.8
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 0.0e+00 1101.7 1084 66.8
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.6e-309 1066.2 1085 64.9
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.8e-282 975.7 1086 59.1
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.5e-275 953.4 995 61.7
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 3.8e-271 938.7 1115 59.5
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 7.2e-270 934.5 1100 60.4
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 7.2e-270 934.5 1097 60.5
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 8.8e-268 927.5 1106 59.4
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.6e-253 880.2 1084 53.4
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.5e-232 808.9 1046 50.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 8.3e-210 734.9 1090 44.5
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 4.1e-209 732.6 1094 46.0
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 5.6e-206 722.2 1092 46.2
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.6e-203 713.4 1089 44.6
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 5.8e-203 712.2 1086 42.9
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 5.8e-203 712.2 1095 44.5
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 7.3e-198 695.3 1099 43.8
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-196 690.3 1095 44.2
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.9e-196 688.3 1091 43.6
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 4.4e-195 686.0 1105 43.0
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.0e-191 674.9 1088 41.4
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 9.6e-190 668.3 1111 43.2
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 6.2e-189 665.6 943 46.3
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.1e-188 664.8 1086 41.2
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.0e-188 662.9 1085 42.4
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.9e-188 662.1 1113 41.1
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 4.4e-187 659.4 1088 40.1
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-186 657.9 1088 40.7
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.6e-184 651.0 1095 40.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.0e-183 648.3 1084 40.2
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 5.1e-183 646.0 1095 39.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 5.8e-179 632.5 1089 39.6
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 5.8e-179 632.5 1089 39.5
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.3e-178 631.3 1093 41.1
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.2e-178 630.6 1093 40.3
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.8e-178 629.8 1099 40.0
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.9e-177 627.5 1076 39.5
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 5.5e-177 625.9 1095 40.5
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.1e-176 624.0 1100 40.6
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 5.1e-175 619.4 1096 39.5
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.5e-174 617.8 1084 39.8
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.5e-174 617.8 1098 40.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 9.6e-174 615.1 1096 39.9
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 4.8e-173 612.8 1112 40.0
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.4e-172 611.3 1086 41.6
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 5.8e-171 605.9 1096 39.1
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.1e-169 601.7 987 42.0
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.7e-168 597.0 1101 38.6
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.0e-167 593.6 1119 39.7
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.1e-167 592.8 1082 38.4
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 2.5e-166 590.5 1101 38.1
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 3.3e-166 590.1 1096 41.1
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 5.7e-166 589.3 1110 41.5
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 7.4e-166 589.0 1096 40.1
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.3e-165 588.2 1097 39.2
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.1e-165 587.4 1055 40.6
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 8.2e-165 585.5 982 40.5
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.4e-164 584.7 797 47.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.5e-163 581.3 1123 38.8
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.2e-162 577.4 1095 40.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.1e-161 575.1 982 41.9
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.9e-161 574.3 1094 37.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.3e-159 568.2 1092 37.2
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.3e-159 568.2 1092 40.3
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.5e-158 564.7 1092 37.0
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.3e-158 563.1 1099 39.6
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 7.4e-158 562.4 955 40.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 3.1e-156 557.0 839 45.9
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 7.7e-155 552.4 994 39.1
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.2e-154 550.8 707 47.2
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 3.8e-154 550.1 1139 35.4
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 7.2e-153 545.8 842 42.0
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.2e-152 545.0 1003 38.4
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 2.3e-151 540.8 944 39.3
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 3.9e-151 540.0 605 52.9
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 3.3e-150 537.0 526 57.8
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.3e-149 535.0 568 54.6
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.1e-148 531.9 1000 37.9
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.4e-148 530.8 810 42.8
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 3.8e-146 523.5 569 50.8
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 6.5e-146 522.7 837 41.0
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.4e-145 521.5 557 53.3
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 3.2e-145 520.4 548 54.7
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 3.2e-145 520.4 1082 37.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 9.4e-145 518.8 810 42.7
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 2.3e-143 514.2 813 42.7
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 3.9e-143 513.5 1003 37.4
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 9.7e-142 508.8 729 44.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.8e-141 507.3 832 38.8
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 6.3e-141 506.1 861 40.0
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.8e-140 504.6 836 40.3
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 4.1e-140 503.4 828 39.9
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.6e-139 500.7 526 53.6
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 8.5e-138 495.7 975 38.7
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.5e-137 494.2 981 37.1
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.2e-136 491.9 561 49.0
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 6.1e-136 489.6 545 52.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 3.0e-135 487.3 567 49.9
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 6.7e-135 486.1 526 51.5
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.5e-134 485.0 567 49.7
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.7e-133 481.5 568 48.4
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 4.8e-133 479.9 810 40.6
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.1e-132 477.2 846 37.2
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.1e-132 477.2 512 52.5
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 5.9e-131 473.0 834 39.3
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.3e-130 471.9 1058 37.6
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.5e-129 467.6 641 44.8
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 4.2e-129 466.8 1086 34.8
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.6e-128 464.9 528 50.8
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.5e-126 458.4 827 40.9
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 4.4e-126 456.8 299 74.2
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.7e-123 447.6 1049 33.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 2.5e-121 441.0 316 70.6
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.2e-118 432.2 832 35.6
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 5.4e-116 423.3 558 46.4
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.6e-112 411.8 345 61.4
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-111 408.7 344 63.1
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-109 402.1 733 39.8
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.0e-106 391.0 277 70.8
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 4.3e-105 387.1 548 41.8
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.5e-102 378.6 566 40.1
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.2e-96 356.7 583 37.7
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.2e-95 353.6 307 57.7
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 4.4e-94 350.5 592 37.8
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 4.3e-89 334.0 368 52.4
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.1e-88 331.6 220 75.5
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.7e-88 330.5 492 41.5
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 6.2e-88 330.1 969 31.7
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 8.9e-87 326.2 583 36.5
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.2e-86 325.9 453 46.8
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.3e-81 306.6 190 81.1
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.0e-79 300.8 364 48.6
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 6.9e-79 300.1 555 35.1
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 9.9e-78 296.2 750 37.1
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 5.8e-70 270.4 203 67.5
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.3e-69 269.2 484 35.5
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.7e-69 268.9 184 70.1
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.5e-67 261.2 317 44.2
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.7e-66 256.5 274 54.0
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.0e-58 231.5 430 38.4
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 7.6e-54 216.9 154 68.8
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.5e-52 211.8 188 61.7
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.3e-50 205.3 302 39.1
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 8.7e-50 203.4 183 59.6
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.8e-47 195.7 312 37.5
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 2.7e-43 181.8 571 30.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.7e-40 171.4 153 58.8
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.4e-39 168.7 302 37.7
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.0e-37 163.3 303 38.0
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.3e-37 162.9 98 81.6
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.0e-34 153.3 412 32.0
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 8.8e-34 150.2 569 28.6
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.7e-32 146.0 376 31.6
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-30 139.4 694 28.7
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 2.2e-29 135.6 85 77.6
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.6e-27 129.4 566 28.4
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 3.0e-26 125.2 210 40.0
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.4e-23 116.3 63 87.3
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 4.1e-23 114.8 561 25.8
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.0e-21 110.2 475 26.1
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.2e-21 109.0 291 35.1
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.6e-19 102.8 563 32.9
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 8.0e-19 100.5 65 75.4
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.4e-18 99.8 315 28.3
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.0e-18 98.2 125 51.2
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.2e-17 96.7 58 75.9
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 3.3e-17 95.1 64 75.0
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.1e-15 88.2 66 66.7
BcaB08g37258 Brassica carinata HOM05D003684 ORTHO05D091863 2.0e-14 85.9 60 73.3
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.9e-12 79.3 54 70.4
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.6e-11 75.1 39 92.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 8.0e-11 73.9 47 70.2
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 9.8e-09 67.0 456 24.1
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 6.3e-08 64.3 326 30.1
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-07 63.5 38 84.2
arahy.Tifrunner.gnm1.ann1.0536J9 Arachis hypogaea HOM05D000340 ORTHO05D000677 1.6e-06 59.7 33 75.8
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.5e-06 58.5 32 78.1


User provided reference genes

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