Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 0.0e+00 1156.7 626 100.0
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.0e-288 995.3 630 87.1
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 7.6e-259 897.1 619 80.1
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.6e-256 889.4 634 76.7
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.1e-241 840.1 564 80.3
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 6.5e-234 814.3 631 72.9
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 4.5e-227 791.6 625 73.0
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.8e-226 788.5 626 74.1
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.1e-225 786.9 629 72.0
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.1e-224 782.7 627 71.0
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.1e-188 662.5 572 66.6
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 2.5e-177 626.3 461 77.7
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.2e-164 582.8 543 57.3
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.3e-153 546.2 369 75.3
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 6.0e-131 472.2 565 52.4
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.5e-129 466.8 573 48.5
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.4e-127 461.1 562 49.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.4e-127 461.1 541 47.3
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 2.4e-127 460.3 571 51.1
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 2.4e-127 460.3 537 52.0
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.5e-126 457.6 558 48.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.4e-124 450.3 550 48.2
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.2e-123 448.0 533 49.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.7e-123 446.8 534 47.9
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 3.5e-123 446.4 527 46.3
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 6.0e-123 445.7 551 51.7
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.0e-122 444.9 580 48.3
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.0e-122 444.9 526 45.8
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 6.7e-122 442.2 560 45.0
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.9e-121 440.7 551 46.8
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.3e-121 439.9 565 49.4
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 5.6e-121 439.1 587 46.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.3e-120 438.0 551 44.8
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.3e-120 438.0 557 44.5
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 2.1e-120 437.2 562 49.5
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.8e-120 436.8 557 44.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.2e-120 435.6 556 45.0
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 8.2e-120 435.3 565 48.8
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 8.2e-120 435.3 532 44.0
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.1e-119 434.9 561 44.6
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.1e-119 434.9 538 44.6
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.4e-119 433.7 557 44.9
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 5.3e-119 432.6 534 44.6
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 9.0e-119 431.8 552 47.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.2e-118 431.4 560 47.1
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.6e-118 430.3 561 44.4
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 4.9e-117 426.0 587 41.6
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 6.5e-117 425.6 551 44.8
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-114 417.2 557 46.3
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 3.0e-114 416.8 547 45.7
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 3.9e-114 416.4 566 43.1
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 5.1e-114 416.0 562 46.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 5.7e-113 412.5 578 45.0
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 9.6e-113 411.8 595 44.5
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 2.1e-112 410.6 566 47.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 6.9e-111 405.6 540 45.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.2e-110 404.8 555 44.3
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 3.4e-110 403.3 541 41.8
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 5.9e-110 402.5 572 40.4
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 3.8e-109 399.8 514 42.4
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.9e-108 397.5 553 45.6
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.5e-108 397.1 568 41.9
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.2e-107 394.8 533 47.5
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 7.9e-107 392.1 555 43.1
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 8.2e-104 382.1 581 40.6
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.9e-103 379.0 535 42.4
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.6e-102 377.1 532 39.1
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.5e-102 376.3 579 42.8
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.3e-101 374.8 508 47.4
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.2e-101 374.0 547 40.8
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.9e-101 373.6 523 43.4
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 7.2e-100 369.0 518 41.3
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 2.3e-98 364.0 366 53.0
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 4.8e-96 356.3 561 39.4
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 8.2e-96 355.5 471 46.5
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 8.2e-96 355.5 565 42.7
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 5.5e-92 342.8 545 40.0
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 4.1e-87 326.6 409 50.9
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 4.5e-86 323.2 555 38.4
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 2.1e-83 314.3 486 37.2
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 2.1e-83 314.3 416 47.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 4.7e-83 313.2 389 53.2
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 6.7e-82 309.3 566 38.7
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.2e-81 308.5 502 37.8
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.4e-79 301.6 566 34.8
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.8e-79 301.2 367 46.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.7e-77 294.7 349 47.0
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 5.0e-77 293.1 517 34.6
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 8.5e-77 292.4 554 37.4
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.1e-76 292.0 496 38.7
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 3.2e-76 290.4 561 39.6
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 3.2e-76 290.4 535 33.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 5.2e-74 283.1 345 45.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.5e-70 270.4 510 35.3
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 5.5e-68 263.1 454 40.5
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.5e-65 255.0 509 34.8
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.6e-59 233.8 619 29.7
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.8e-55 221.5 253 49.8
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.3e-53 215.3 654 27.1
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 2.8e-51 207.6 316 40.5
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.2e-49 202.2 245 46.5
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 3.4e-49 200.7 316 37.7
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.9e-48 197.6 347 34.0
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 7.0e-47 193.0 258 41.9
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.4e-39 167.9 320 41.2
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 5.4e-39 166.8 146 57.5
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 2.1e-35 154.8 163 46.6
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 2.0e-33 148.3 104 61.5
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.7e-30 137.9 250 37.2
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.5e-30 137.5 132 52.3
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 7.8e-30 136.3 115 51.3
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 6.6e-29 133.3 102 55.9
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 8.7e-29 132.9 94 57.4
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.9e-28 131.7 125 48.8
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 7.3e-28 129.8 115 48.7
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.6e-27 128.6 87 57.5
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.8e-27 127.9 100 57.0
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.7e-27 127.1 128 48.4
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.4e-26 124.8 116 51.7
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 6.9e-26 123.2 89 53.9
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.0e-25 121.7 123 46.3
C01p11360 Brassica napus HOM05D004644 ORTHO05D041344 2.4e-23 114.8 78 74.4
BolC1t01105H Brassica oleracea HOM05D004644 ORTHO05D041344 2.4e-23 114.8 78 74.4
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 4.2e-23 114.0 198 40.9
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.0e-21 109.4 72 55.6
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.3e-21 108.2 125 41.6
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.9e-20 105.1 101 49.5
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 7.3e-20 103.2 487 23.2
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 9.6e-20 102.8 91 49.5
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-19 102.1 81 53.1
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 6.9e-18 96.7 150 42.0
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 4.5e-17 94.0 94 51.1
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.3e-16 92.4 79 57.0
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 2.2e-16 91.7 91 47.3
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.4e-16 90.1 86 37.2
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.6e-14 85.5 113 39.8
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 4.6e-14 84.0 113 37.2
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 6.7e-13 80.1 68 47.1
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 5.6e-12 77.0 102 41.2
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 9.6e-12 76.3 90 43.3
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.6e-12 76.3 72 44.4
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.6e-11 75.5 87 41.4
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-11 75.5 72 43.1
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-11 75.5 72 43.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 2.8e-11 74.7 64 46.9
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 3.1e-10 71.2 63 60.3
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.9e-10 70.1 65 43.1
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 4.5e-09 67.4 55 61.8
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 7.6e-09 66.6 53 62.3
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.7e-08 65.5 57 49.1
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.8e-08 64.3 38 60.5
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.1e-07 62.8 156 25.0
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 2.7e-06 58.2 47 48.9
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 7.9e-06 56.6 60 45.0


User provided reference genes

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