Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 2379.0 1196 100.0
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 2302.7 1198 96.3
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 2234.5 1197 93.4
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 2221.0 1199 92.7
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 2206.8 1197 91.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 2181.0 1197 91.4
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2164.4 1198 90.0
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2162.9 1198 90.0
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 2153.6 1208 89.2
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 2144.8 1222 88.4
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 2092.4 1197 87.0
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 2069.7 1198 87.5
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1945.6 1196 80.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1771.5 1205 78.3
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1725.3 1205 75.4
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1702.2 1201 69.2
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1698.7 1199 69.2
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1696.4 1198 68.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1690.2 1201 68.9
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1688.7 1196 67.8
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1681.0 1198 68.8
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1677.9 1194 68.4
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1677.1 1197 68.1
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1677.1 1201 68.1
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1674.8 1238 66.7
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1674.8 1201 68.1
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1674.4 1197 68.4
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1674.4 1196 68.1
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1672.1 1197 68.2
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1669.8 1194 68.3
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1667.9 1197 68.2
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1666.7 1171 68.7
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1662.1 1191 67.4
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1658.7 1180 68.6
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1657.5 1197 67.7
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1653.3 1193 67.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1645.9 1199 68.1
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1624.4 1196 66.6
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1613.6 1197 65.8
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1613.2 1192 65.9
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1612.4 1196 65.4
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1606.3 1195 66.4
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1605.1 1194 65.0
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1602.4 1194 64.8
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1591.2 1195 65.0
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1588.2 1199 64.8
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1193 65.5
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1308 61.5
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1581.6 1191 63.6
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1578.9 1202 64.8
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1577.8 1194 64.2
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1577.4 1223 63.1
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1577.0 1209 63.9
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1575.8 1203 64.9
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1572.4 1193 64.0
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1570.1 1197 63.7
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1194 63.8
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1193 63.7
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1568.9 1209 63.1
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1565.1 1191 63.1
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1564.7 1178 64.4
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1563.9 1193 63.4
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1560.4 1194 63.1
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1557.7 1192 63.5
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1555.8 1193 63.0
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1552.7 1202 63.9
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1552.3 1154 65.0
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1541.9 1194 63.3
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1532.7 1195 62.8
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1522.3 1181 61.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1522.3 1207 61.0
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1521.5 1238 60.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1512.7 1198 61.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1511.5 1207 61.0
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1506.9 1207 60.9
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1502.3 1202 61.1
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1497.6 1194 60.6
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1494.2 1198 61.9
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1493.8 1200 60.9
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1490.7 1195 62.7
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1490.3 1171 61.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1481.5 1178 61.0
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1479.5 1202 60.7
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1478.4 1195 62.5
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1476.8 1158 62.1
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1475.7 1272 57.6
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1467.2 1154 61.3
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1454.9 1249 58.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1454.1 1014 69.5
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1453.7 1178 61.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1424.1 1190 59.5
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1423.3 1238 57.9
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1370.1 763 88.5
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1364.7 1191 56.4
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1360.9 1281 54.6
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1328.5 1191 55.1
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1322.4 1023 63.4
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1306.2 1204 55.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1268.1 969 64.6
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1236.9 987 62.5
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1232.6 1169 54.6
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1199.9 1195 53.1
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1164.8 1205 49.5
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1139.4 1217 50.0
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1139.0 1210 48.4
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1121.7 1167 48.8
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1115.9 834 65.5
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.2e-302 1043.5 590 88.0
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.4e-301 1040.0 855 62.3
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 8.4e-275 951.0 711 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 3.1e-253 879.4 1072 43.8
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 8.0e-241 838.2 1100 42.5
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.2e-240 835.5 717 58.2
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 2.8e-217 760.0 588 71.6
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 4.1e-213 746.1 1173 39.5
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.2e-199 701.4 564 63.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.3e-198 698.0 484 67.8
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.5e-194 684.5 481 70.1
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.3e-187 661.4 753 49.0
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 8.5e-150 535.8 368 76.4
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.2e-140 505.4 387 65.6
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 4.7e-132 476.9 411 58.4
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 7.0e-120 436.4 716 38.4
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 3.7e-97 360.9 257 67.7
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.9e-81 308.1 280 58.6
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 2.1e-55 222.2 298 41.3
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 7.9e-55 220.3 175 60.0
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.3e-52 213.0 190 55.8
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.0e-49 203.4 302 39.7
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 1.2e-47 196.4 234 46.2
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.2e-47 196.4 140 70.0
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 4.6e-47 194.5 135 77.0
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.8e-27 129.4 145 48.3
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 7.0e-19 100.9 72 62.5
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 4.7e-15 88.2 203 31.5
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 2.6e-13 82.4 94 47.9
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 7.5e-13 80.9 320 23.1
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 5.9e-10 71.2 94 43.6
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 7.7e-10 70.9 62 58.1
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.0e-09 70.5 107 40.2
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 8.5e-09 67.4 44 70.5
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.1e-08 67.0 59 57.6
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 8.0e-07 60.8 45 62.2
A09p25680 Brassica napus HOM05D005254 ORTHO05D100756 3.0e-06 58.9 24 100.0


User provided reference genes

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