Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G41890 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 2.0e-59 232.3 119 100.0
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 4.9e-34 147.9 109 75.2
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.4e-33 146.4 109 74.3
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 6.0e-32 141.0 109 69.7
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 7.9e-32 140.6 109 69.7
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 1.0e-31 140.2 109 71.6
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 1.3e-31 139.8 109 69.7
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 5.1e-31 137.9 117 62.4
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 6.7e-31 137.5 117 62.4
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.5e-30 136.3 109 68.8
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 5.7e-30 134.4 117 61.5
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 2.8e-29 132.1 107 65.4
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 2.4e-28 129.0 109 64.2
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 5.3e-28 127.9 109 63.3
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.2e-27 126.7 109 62.4
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.5e-27 126.3 109 62.4
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 2.0e-27 125.9 109 62.4
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 4.5e-27 124.8 109 62.4
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.3e-26 123.2 109 60.6
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 2.2e-26 122.5 107 62.6
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 2.2e-26 122.5 107 62.6
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 2.9e-26 122.1 107 62.6
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 2.9e-26 122.1 107 62.6
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 8.4e-26 120.6 107 62.6
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 1.4e-25 119.8 107 61.7
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 7.2e-25 117.5 108 58.3
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 6.1e-24 114.4 118 56.8
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 2.3e-23 112.5 109 56.0
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 5.1e-23 111.3 108 56.5
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 6.7e-23 110.9 108 51.9
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 1.1e-22 110.2 113 56.6
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 1.9e-22 109.4 109 56.0
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 2.5e-22 109.0 109 54.1
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 2.5e-22 109.0 107 54.2
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 4.3e-22 108.2 108 55.6
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 4.3e-22 108.2 108 53.7
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 5.7e-22 107.8 108 55.6
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 7.4e-22 107.5 109 51.4
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 7.4e-22 107.5 109 56.0
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 9.7e-22 107.1 109 56.0
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 9.7e-22 107.1 109 54.1
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.3e-21 106.7 107 52.3
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 1.3e-21 106.7 109 55.0
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 1.3e-21 106.7 109 55.0
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 1.6e-21 106.3 109 56.0
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 2.2e-21 105.9 109 52.3
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 2.2e-21 105.9 109 54.1
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 2.2e-21 105.9 107 55.1
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 3.7e-21 105.1 108 52.8
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 3.7e-21 105.1 108 55.6
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 3.7e-21 105.1 108 53.7
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 4.8e-21 104.8 108 50.9
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 4.8e-21 104.8 107 53.3
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 4.8e-21 104.8 110 55.5
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 6.3e-21 104.4 108 54.6
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 8.2e-21 104.0 108 55.6
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 8.2e-21 104.0 109 52.3
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 1.8e-20 102.8 100 55.0
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 2.4e-20 102.4 105 53.3
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 2.4e-20 102.4 110 52.7
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 2.4e-20 102.4 111 53.2
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 2.4e-20 102.4 109 51.4
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 3.1e-20 102.1 109 52.3
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 4.1e-20 101.7 109 50.5
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.1e-20 101.7 108 53.7
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 5.3e-20 101.3 108 53.7
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 6.9e-20 100.9 108 50.9
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 6.9e-20 100.9 108 51.9
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 9.0e-20 100.5 109 52.3
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 9.0e-20 100.5 106 52.8
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 9.0e-20 100.5 112 52.7
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 9.0e-20 100.5 109 53.2
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 9.0e-20 100.5 107 54.2
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 9.0e-20 100.5 108 50.9
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.2e-19 100.1 107 52.3
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 1.2e-19 100.1 109 53.2
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.2e-19 100.1 109 53.2
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.2e-19 100.1 109 53.2
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 1.5e-19 99.8 110 53.6
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.5e-19 99.8 109 53.2
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 1.5e-19 99.8 111 55.9
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 2.0e-19 99.4 108 51.9
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 3.4e-19 98.6 108 52.8
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 3.4e-19 98.6 109 53.2
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 4.5e-19 98.2 110 52.7
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 4.5e-19 98.2 110 51.8
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 7.7e-19 97.4 109 47.7
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 7.7e-19 97.4 109 49.5
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 1.0e-18 97.1 108 51.9
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 1.0e-18 97.1 108 52.8
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.3e-18 96.7 112 50.0
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 1.3e-18 96.7 112 50.0
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 1.7e-18 96.3 108 52.8
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.7e-18 96.3 112 50.0
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 2.2e-18 95.9 108 49.1
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 2.2e-18 95.9 108 49.1
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 2.2e-18 95.9 109 49.5
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 3.8e-18 95.1 108 49.1
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 5.0e-18 94.7 107 50.5
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 5.0e-18 94.7 108 48.1
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 5.0e-18 94.7 100 54.0
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 5.0e-18 94.7 108 48.1
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 6.5e-18 94.4 107 47.7
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 6.5e-18 94.4 108 50.0
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 1.4e-17 93.2 108 50.0
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.4e-17 93.2 108 49.1
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.9e-17 92.8 114 45.6
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 4.2e-17 91.7 109 48.6
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 5.5e-17 91.3 108 48.1
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 2.7e-16 89.0 119 42.9
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.6e-16 88.6 108 47.2
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 4.6e-16 88.2 108 48.1
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 6.1e-16 87.8 106 49.1
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 6.1e-16 87.8 133 45.1
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 1.0e-15 87.0 104 46.2
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 3.0e-15 85.5 130 45.4
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.0e-15 85.5 111 38.7
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.0e-15 85.5 109 45.0
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.0e-15 85.5 109 45.0
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.5e-14 83.2 106 46.2
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.5e-14 82.4 106 46.2
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 7.4e-14 80.9 113 41.6
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 8.2e-13 77.4 111 44.1
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 8.2e-13 77.4 112 46.4
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 8.2e-13 77.4 93 48.4
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 5.3e-12 74.7 106 42.5
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 6.9e-12 74.3 116 37.1
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 6.9e-12 74.3 109 40.4
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 6.9e-12 74.3 62 64.5
Psat1g070560 Pisum sativum HOM05D003128 ORTHO05D004333 2.0e-11 72.8 62 62.9
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 3.4e-11 72.0 105 38.1
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 3.4e-11 72.0 105 38.1
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 5.9e-11 71.2 98 42.9
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.3e-10 70.1 123 40.7
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 2.2e-10 69.3 108 40.7
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.2e-10 69.3 108 40.7
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 2.9e-10 68.9 108 39.8
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 3.8e-10 68.6 92 47.8
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.4e-09 66.6 108 38.9
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 3.2e-09 65.5 106 38.7
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 4.2e-09 65.1 108 39.8
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 1.0e-07 60.5 115 38.3
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 8.8e-07 57.4 63 52.4
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 8.8e-07 57.4 91 40.7


User provided reference genes

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