Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.2e-130 469.9 259 100.0
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.9e-123 446.0 258 89.9
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 7.0e-118 427.6 257 87.5
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 2.7e-117 425.6 258 84.5
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 5.2e-113 411.4 256 81.2
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 1.1e-110 403.7 258 86.4
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 2.7e-109 399.1 219 90.4
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 4.0e-105 385.2 259 83.4
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 6.4e-103 377.9 253 83.4
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 6.4e-103 377.9 253 83.4
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.4e-102 376.7 254 83.1
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 9.5e-99 364.0 221 79.6
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 1.6e-98 363.2 278 75.9
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 5.4e-94 348.2 198 87.4
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 2.2e-87 326.2 219 73.1
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 3.6e-82 308.9 219 68.0
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.4e-81 306.2 222 65.3
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.4e-81 306.2 222 67.6
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 6.9e-81 304.7 220 67.7
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 2.6e-80 302.8 222 66.2
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 6.4e-79 298.1 217 68.2
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 1.9e-78 296.6 223 66.4
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 3.2e-78 295.8 221 65.6
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 5.4e-78 295.0 217 67.7
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 5.4e-78 295.0 221 65.2
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.2e-77 293.9 186 76.9
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 1.2e-77 293.9 221 65.6
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 2.1e-77 293.1 225 64.9
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 4.6e-77 292.0 218 67.0
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 1.0e-76 290.8 223 65.5
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 1.3e-76 290.4 223 65.5
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.3e-76 290.4 225 64.9
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 2.3e-76 289.7 221 65.2
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 3.0e-76 289.3 224 66.5
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 3.0e-76 289.3 219 63.0
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 3.0e-76 289.3 219 63.0
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 3.0e-76 289.3 219 63.0
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 5.1e-76 288.5 218 66.1
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 5.1e-76 288.5 217 66.4
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 6.7e-76 288.1 217 66.4
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 8.7e-76 287.7 220 64.1
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 8.7e-76 287.7 222 63.1
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 1.5e-75 287.0 222 62.2
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 2.5e-75 286.2 222 64.4
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 2.5e-75 286.2 217 66.4
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 4.3e-75 285.4 213 67.1
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 5.6e-75 285.0 215 66.5
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 1.6e-74 283.5 213 67.6
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 1.6e-74 283.5 218 65.6
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 2.1e-74 283.1 222 62.6
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 4.8e-74 282.0 215 64.2
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.4e-73 280.4 218 62.8
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 1.8e-73 280.0 219 62.6
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.8e-73 280.0 222 61.3
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.8e-73 280.0 216 63.0
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 2.4e-73 279.6 222 62.2
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 2.4e-73 279.6 228 63.2
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 3.1e-73 279.3 218 65.6
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 5.3e-73 278.5 219 63.9
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 9.0e-73 277.7 217 61.3
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 9.0e-73 277.7 224 61.2
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 1.2e-72 277.3 214 63.6
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.5e-72 276.9 215 61.4
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 2.0e-72 276.6 222 63.5
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 2.6e-72 276.2 229 62.4
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 4.5e-72 275.4 222 62.6
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.2e-71 273.1 215 61.4
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 2.2e-71 273.1 225 60.0
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 2.9e-71 272.7 218 62.4
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 8.4e-71 271.2 263 58.6
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.1e-70 270.8 219 60.3
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 2.5e-70 269.6 223 61.9
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 4.2e-70 268.9 207 64.3
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 5.5e-70 268.5 199 66.3
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 5.5e-70 268.5 198 66.2
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 5.5e-70 268.5 216 62.5
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 7.1e-70 268.1 222 60.8
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 2.1e-69 266.5 251 55.4
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 2.7e-69 266.2 221 58.4
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.5e-69 265.8 220 61.8
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 3.5e-69 265.8 223 61.0
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 6.0e-69 265.0 225 60.9
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.0e-68 264.2 218 58.3
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 3.9e-68 262.3 223 60.1
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 5.1e-68 261.9 222 59.5
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 4.3e-67 258.8 221 58.4
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 5.6e-67 258.5 199 62.8
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 3.7e-66 255.8 217 59.4
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 8.2e-66 254.6 224 54.5
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 1.1e-65 254.2 219 57.5
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 1.8e-65 253.4 214 58.4
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 5.3e-65 251.9 213 60.1
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 6.9e-65 251.5 214 57.5
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 6.9e-65 251.5 222 58.1
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 9.0e-65 251.1 214 60.3
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 1.2e-64 250.8 200 63.0
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.2e-64 250.8 215 57.7
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.0e-64 250.0 214 57.0
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 3.4e-64 249.2 250 52.0
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.5e-64 248.8 214 57.0
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 7.6e-64 248.1 214 57.0
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 1.0e-63 247.7 164 71.3
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.7e-63 246.9 250 51.2
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 5.5e-62 241.9 195 61.0
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 4.3e-59 232.3 221 52.0
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 2.2e-58 229.9 232 48.3
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 2.8e-58 229.6 135 88.9
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 4.8e-58 228.8 170 66.5
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 1.1e-57 227.6 158 67.1
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 6.9e-57 224.9 240 50.4
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 9.0e-57 224.6 177 63.8
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 2.0e-56 223.4 214 54.2
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 2.6e-56 223.0 214 50.5
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 2.6e-56 223.0 219 53.0
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 4.5e-56 222.2 198 57.6
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 5.0e-55 218.8 209 55.0
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 4.2e-54 215.7 227 52.0
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 2.1e-53 213.4 162 64.8
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 2.7e-53 213.0 184 67.9
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 4.6e-53 212.2 165 63.6
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.9e-47 193.0 145 65.5
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 2.1e-45 186.8 166 55.4
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 8.2e-42 174.9 122 68.0
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 1.7e-39 167.2 164 50.0
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 3.2e-38 162.9 170 50.0
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.8e-33 147.1 92 72.8
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 3.8e-31 139.4 89 69.7
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 1.0e-28 131.3 104 57.7
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.4e-28 131.0 128 53.1
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 1.2e-27 127.9 193 45.1
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 1.7e-26 124.0 169 47.3
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 2.8e-26 123.2 189 39.2
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 3.7e-26 122.9 170 46.5
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 1.5e-19 100.9 154 42.9
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 2.6e-19 100.1 137 45.3
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 4.8e-18 95.9 61 80.3
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 3.1e-17 93.2 61 78.7
SpUn0056_0040 Schrenkiella parvula HOM05D005088 ORTHO05D017652 5.4e-17 92.4 58 77.6
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 1.0e-15 88.2 51 76.5
BolC2t09028H Brassica oleracea HOM05D005088 ORTHO05D017652 2.9e-15 86.7 61 75.4
C06p46790 Brassica napus HOM05D005088 ORTHO05D017652 8.6e-15 85.1 52 80.8
C05p10570 Brassica napus HOM05D005088 ORTHO05D017652 1.9e-14 84.0 61 73.8
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 3.9e-07 59.7 57 49.1
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 1.9e-06 57.4 47 55.3


User provided reference genes

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