Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 7.2e-37 156.8 80 100.0
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.5e-36 154.5 79 98.7
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 3.5e-36 154.5 79 98.7
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 3.5e-36 154.5 79 98.7
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.0e-35 152.9 79 97.5
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 2.3e-35 151.8 79 97.5
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.9e-34 148.7 79 93.7
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 5.7e-34 147.1 80 96.2
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.4e-34 146.7 79 92.4
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.4e-34 146.7 79 92.4
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 2.2e-33 145.2 79 93.7
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-33 145.2 79 91.1
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-33 144.8 79 91.1
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-33 144.8 79 91.1
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-33 144.8 79 91.1
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-33 144.8 79 91.1
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-33 144.8 79 91.1
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 3.7e-33 144.4 79 92.4
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 3.7e-33 144.4 79 91.1
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 3.7e-33 144.4 79 91.1
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.7e-33 144.4 79 91.1
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 4.8e-33 144.1 79 93.7
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 8.2e-33 143.3 78 93.6
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 8.2e-33 143.3 79 89.9
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 8.2e-33 143.3 79 89.9
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 8.2e-33 143.3 79 89.9
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 8.2e-33 143.3 77 92.2
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 8.2e-33 143.3 79 89.9
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 3.1e-32 141.4 79 92.4
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 3.1e-32 141.4 79 88.6
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.1e-32 141.4 79 89.9
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.1e-32 141.4 79 87.3
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 4.1e-32 141.0 79 87.3
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 6.9e-32 140.2 79 89.9
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 6.9e-32 140.2 77 89.6
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 9.0e-32 139.8 79 87.3
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.2e-31 139.4 79 88.6
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.2e-31 139.4 79 89.9
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.0e-31 138.7 79 87.3
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 2.0e-31 138.7 79 88.6
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 2.6e-31 138.3 79 88.6
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.4e-31 137.9 77 87.0
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 3.4e-31 137.9 79 88.6
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 7.7e-31 136.7 76 89.5
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-30 136.3 79 87.3
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-30 136.3 79 87.3
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.0e-30 136.3 79 87.3
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-30 135.2 74 90.5
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.2e-30 135.2 79 83.5
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-30 135.2 79 86.1
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.2e-30 135.2 79 84.8
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.9e-30 134.8 69 98.6
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 6.5e-30 133.7 79 84.8
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 8.5e-30 133.3 78 84.6
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.1e-29 132.9 77 84.4
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 2.5e-29 131.7 77 81.8
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 4.2e-29 131.0 79 81.0
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 7.2e-29 130.2 78 82.1
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 2.1e-28 128.6 79 86.1
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.1e-28 128.6 78 83.3
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.6e-28 127.9 79 78.5
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 4.6e-28 127.5 77 81.8
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.1e-27 124.0 74 82.4
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.5e-26 122.5 79 78.5
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.5e-26 122.5 79 78.5
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.5e-26 122.5 79 78.5
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.3e-26 120.9 78 74.4
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.3e-26 120.9 78 74.4
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 4.8e-25 117.5 79 77.2
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 4.8e-25 117.5 79 77.2
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.4e-24 115.2 67 83.6
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 6.9e-24 113.6 78 69.2
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 6.9e-24 113.6 78 69.2
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 2.0e-23 112.1 77 77.9
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 4.5e-23 110.9 78 69.2
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 4.5e-23 110.9 78 69.2
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.9e-23 110.5 64 87.5
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 7.7e-23 110.2 78 66.7
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 1.3e-22 109.4 72 81.9
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 3.8e-22 107.8 66 81.8
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 3.8e-22 107.8 79 73.4
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 5.0e-22 107.5 76 68.4
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.1e-21 106.3 78 64.1
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.9e-21 105.5 67 76.1
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.5e-21 105.1 79 64.6
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 5.5e-21 104.0 79 69.6
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 2.1e-20 102.1 73 67.1
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 2.1e-20 102.1 73 67.1
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 2.1e-20 102.1 73 67.1
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 2.1e-20 102.1 73 67.1
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 2.1e-20 102.1 73 67.1
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.7e-19 97.1 75 62.7
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.5e-18 95.9 57 84.2
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 2.6e-18 95.1 79 57.0
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-17 92.8 78 61.5
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.8e-17 91.7 76 64.5
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 4.8e-17 90.9 51 86.3
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 6.3e-17 90.5 67 67.2
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.1e-16 88.2 79 57.0
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 3.1e-16 88.2 79 57.0
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 3.1e-16 88.2 79 57.0
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.1e-16 88.2 79 57.0
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 3.1e-16 88.2 79 57.0
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.1e-16 88.2 79 57.0
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 3.1e-16 88.2 79 57.0
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.1e-16 88.2 79 57.0
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 3.1e-16 88.2 79 57.0
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 4.1e-16 87.8 50 88.0
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 9.1e-16 86.7 79 57.0
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 1.2e-15 86.3 79 55.7
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 2.0e-15 85.5 54 79.6
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 2.6e-15 85.1 45 88.9
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 2.6e-15 85.1 79 54.4
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 3.5e-15 84.7 78 55.1
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 2.2e-14 82.0 73 56.2
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 1.1e-13 79.7 42 92.9
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-12 75.9 70 57.1
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 2.3e-11 72.0 45 73.3
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 4.0e-11 71.2 46 76.1
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 2.0e-10 68.9 67 50.7
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 5.7e-10 67.4 35 97.1
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 5.7e-10 67.4 41 82.9
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 7.5e-10 67.0 53 62.3
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 4.8e-09 64.3 38 78.9
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 3.1e-08 61.6 44 63.6
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 4.1e-08 61.2 36 80.6
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 9.1e-08 60.1 34 79.4
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 9.1e-08 60.1 31 96.8
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 9.1e-08 60.1 31 96.8
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 9.1e-08 60.1 31 96.8
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.2e-07 59.7 31 93.5
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.2e-07 59.7 31 93.5
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 2.0e-07 58.9 31 93.5
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 2.0e-07 58.9 31 93.5
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.5e-07 58.2 31 90.3
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 7.7e-07 57.0 31 90.3
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.3e-06 56.2 37 73.0
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 1.7e-06 55.8 35 74.3
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.0e-06 54.3 29 89.7
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 5.0e-06 54.3 31 80.6


User provided reference genes

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