Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.0e-99 364.8 185 100.0
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 8.4e-89 330.5 184 92.4
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.2e-88 328.6 183 87.4
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.1e-87 325.9 183 86.3
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 8.6e-86 320.5 183 84.7
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 8.6e-86 320.5 176 90.3
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 6.9e-83 310.8 183 82.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 2.0e-82 309.3 181 81.8
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 2.0e-82 309.3 181 81.8
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 2.0e-82 309.3 181 81.8
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.4e-82 308.1 183 82.0
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.2e-81 305.8 183 82.5
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 8.4e-81 303.9 192 79.7
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 8.4e-81 303.9 183 81.4
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.4e-80 303.1 181 79.6
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.4e-80 303.1 181 79.6
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.5e-79 298.5 184 79.3
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.0e-78 295.4 183 78.1
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.6e-78 294.3 184 77.7
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.6e-76 289.7 183 78.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.8e-75 286.2 181 76.8
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.4e-75 285.8 183 76.0
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.1e-75 285.4 183 76.0
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 4.0e-75 285.0 183 76.0
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.0e-75 285.0 183 76.0
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 5.3e-75 284.6 183 75.4
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 5.3e-75 284.6 183 76.0
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 9.0e-75 283.9 183 75.4
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 9.0e-75 283.9 183 72.7
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.2e-74 283.5 183 74.9
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 2.0e-74 282.7 183 75.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.6e-74 282.3 183 72.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 4.5e-74 281.6 183 75.4
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 5.8e-74 281.2 181 75.1
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 7.6e-74 280.8 183 72.7
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 9.9e-74 280.4 183 76.0
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 9.9e-74 280.4 183 74.9
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 9.9e-74 280.4 183 74.3
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.2e-73 279.3 183 73.2
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 3.8e-73 278.5 176 77.3
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.8e-73 278.5 176 77.3
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 8.4e-73 277.3 183 73.8
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.1e-72 276.9 183 73.2
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.1e-72 276.9 183 73.2
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-72 276.9 183 73.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.1e-72 276.9 177 76.3
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-72 276.6 183 72.7
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 73.0
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.4e-72 275.8 183 71.0
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 4.2e-72 275.0 183 72.7
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 4.2e-72 275.0 183 73.2
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 4.2e-72 275.0 183 74.3
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.4e-72 274.6 183 71.6
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.4e-72 274.6 183 71.6
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 5.4e-72 274.6 183 70.5
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 7.1e-72 274.2 183 70.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 7.1e-72 274.2 179 73.7
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.2e-71 273.5 183 69.4
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.2e-71 273.5 183 73.2
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 2.1e-71 272.7 175 74.9
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 2.1e-71 272.7 182 71.4
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 2.7e-71 272.3 181 71.3
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.5e-71 271.9 183 72.7
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 4.6e-71 271.6 183 72.1
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 4.6e-71 271.6 183 72.1
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 4.6e-71 271.6 183 71.6
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 4.6e-71 271.6 183 71.6
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.6e-71 271.6 183 72.7
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.0e-70 270.4 183 72.7
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.0e-70 270.4 185 71.9
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.3e-70 270.0 183 72.7
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.8e-70 269.6 183 72.7
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-70 269.2 181 70.7
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-70 269.2 181 70.2
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.3e-70 269.2 181 70.2
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 3.9e-70 268.5 183 70.5
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 5.1e-70 268.1 183 70.5
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 6.7e-70 267.7 183 72.1
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 8.7e-70 267.3 183 68.9
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.5e-69 266.5 183 71.0
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.5e-69 266.5 181 72.4
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.5e-69 266.5 183 72.1
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.5e-69 265.8 185 70.8
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 7.4e-69 264.2 181 69.1
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 9.6e-69 263.8 183 69.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.3e-68 263.5 177 71.2
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.6e-68 263.1 178 71.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 8.1e-68 260.8 181 70.7
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.4e-67 260.0 178 68.0
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.8e-67 259.6 176 68.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.0e-67 258.5 185 73.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 5.3e-67 258.1 176 68.8
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 5.3e-67 258.1 181 69.6
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.2e-66 256.9 179 67.0
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.5e-66 256.5 181 69.1
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.0e-66 256.1 181 68.5
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 2.6e-66 255.8 181 69.6
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 2.6e-66 255.8 181 69.1
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 3.4e-66 255.4 181 65.2
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 7.6e-66 254.2 186 67.2
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 7.6e-66 254.2 169 72.8
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 9.9e-66 253.8 179 68.2
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 1.3e-65 253.4 179 68.2
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.7e-65 253.1 187 66.8
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 1.7e-65 253.1 186 67.2
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 2.2e-65 252.7 177 67.2
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.9e-65 252.3 185 67.0
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.4e-65 250.8 181 67.4
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.1e-64 250.4 183 67.2
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.1e-64 250.4 183 64.5
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.4e-64 250.0 177 66.7
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.9e-64 249.6 183 67.2
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.4e-64 249.2 175 66.9
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.4e-64 249.2 181 66.9
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 2.4e-64 249.2 184 65.2
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.2e-64 248.8 178 66.3
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.2e-64 248.4 184 65.2
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 5.5e-64 248.1 176 68.2
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 2.7e-63 245.7 184 64.7
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 3.5e-63 245.4 185 63.8
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.6e-63 245.0 184 64.1
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 3.0e-62 242.3 189 67.2
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.1e-62 241.5 183 63.9
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.1e-61 240.4 181 67.4
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 5.6e-61 238.0 178 64.0
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.1e-60 236.1 178 66.3
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 2.1e-60 236.1 181 65.2
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 3.7e-60 235.3 181 65.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 8.4e-57 224.2 185 58.9
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.1e-56 223.8 182 61.5
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 7.1e-56 221.1 183 60.7
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.6e-50 202.6 178 60.1
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.7e-49 199.9 165 63.6
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 8.2e-44 181.0 184 52.2
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.5e-42 176.8 115 72.2
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 7.7e-42 174.5 121 67.8
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.4e-38 163.7 197 45.2
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 6.7e-38 161.4 157 51.6
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.1e-35 152.5 106 73.6
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 4.5e-34 148.7 181 37.0
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.0e-21 106.7 109 53.2
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.7e-20 102.4 75 66.7
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 9.4e-16 87.8 57 75.4
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 2.0e-13 80.1 164 32.3
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.6e-13 79.7 54 66.7
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.6e-13 79.7 54 66.7
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 8.6e-09 64.7 35 82.9


User provided reference genes

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