Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G13530 Arabidopsis lyrata HOM05D009656 ORTHO05D011940 8.9e-62 240.7 126 100.0
AT2G03740 Arabidopsis thaliana HOM05D009656 ORTHO05D011940 6.2e-55 218.0 121 94.2
Carub.0005s0288 Capsella rubella HOM05D009656 ORTHO05D011940 1.2e-42 177.2 122 79.5
Sp2g14560 Schrenkiella parvula HOM05D009656 ORTHO05D011940 2.1e-42 176.4 128 72.7
CARHR146250 Cardamine hirsuta HOM05D009656 ORTHO05D011940 4.6e-42 175.3 127 75.6
CARHR146130 Cardamine hirsuta HOM05D009656 ORTHO05D011940 1.8e-41 173.3 116 75.0
AL5G13670 Arabidopsis lyrata HOM05D009656 ORTHO05D011940 1.4e-38 163.7 126 72.2
Thhalv10004969m.g Eutrema salsugineum HOM05D009656 ORTHO05D011940 2.4e-38 162.9 119 70.6
AT2G03850 Arabidopsis thaliana HOM05D009656 ORTHO05D011940 5.3e-38 161.8 128 70.3
Sp2g14570 Schrenkiella parvula HOM05D009656 ORTHO05D011940 1.3e-36 157.1 132 67.4
BcaB07g30284 Brassica carinata HOM05D009656 ORTHO05D011940 6.5e-36 154.8 127 65.4
Thhalv10004937m.g Eutrema salsugineum HOM05D009656 ORTHO05D011940 4.2e-35 152.1 110 72.7
BcaC03g17233 Brassica carinata HOM05D009656 ORTHO05D011940 2.7e-34 149.4 115 68.7
C02p51680 Brassica napus HOM05D009656 ORTHO05D011940 2.7e-34 149.4 115 68.7
BolC2t11254H Brassica oleracea HOM05D009656 ORTHO05D011940 2.7e-34 149.4 115 68.7
C02p51700 Brassica napus HOM05D009656 ORTHO05D011940 7.9e-34 147.9 115 67.8
A02p33560 Brassica napus HOM05D009656 ORTHO05D011940 1.5e-32 143.7 112 67.9
BraA02t08377Z Brassica rapa HOM05D009656 ORTHO05D011940 1.5e-32 143.7 112 67.9
C07p34100 Brassica napus HOM05D009656 ORTHO05D011940 2.1e-31 139.8 117 67.5
BolC7t43924H Brassica oleracea HOM05D009656 ORTHO05D011940 2.1e-31 139.8 117 67.5
Carub.0005s0301 Capsella rubella HOM05D009656 ORTHO05D011940 2.4e-30 136.3 128 64.1
A06p42920 Brassica napus HOM05D009656 ORTHO05D011940 7.6e-29 131.3 118 65.3
BcaC06g31167 Brassica carinata HOM05D009656 ORTHO05D011940 5.0e-28 128.6 117 65.0
BcaC06g31156 Brassica carinata HOM05D009656 ORTHO05D011940 6.9e-14 81.6 63 65.1
Aa31LG1G24350 Aethionema arabicum HOM05D009656 ORTHO05D011940 1.9e-11 73.6 93 47.3
A08p31490 Brassica napus HOM05D000133 ORTHO05D005407 1.4e-09 67.4 76 59.2
BraA08t35071Z Brassica rapa HOM05D000133 ORTHO05D005407 1.4e-09 67.4 76 59.2
CARHR016340 Cardamine hirsuta HOM05D009656 ORTHO05D017552 1.4e-09 67.4 75 58.7
Sp4g24660 Schrenkiella parvula HOM05D010227 ORTHO05D012306 1.8e-09 67.0 119 43.7
AL1G27970 Arabidopsis lyrata HOM05D000133 ORTHO05D005407 3.9e-09 65.9 75 58.7
AT1G15820 Arabidopsis thaliana HOM05D000133 ORTHO05D005407 3.9e-09 65.9 75 58.7
C05p14070 Brassica napus HOM05D000133 ORTHO05D005407 3.9e-09 65.9 75 58.7
BolC5t30138H Brassica oleracea HOM05D000133 ORTHO05D005407 3.9e-09 65.9 75 58.7
AT2G42530 Arabidopsis thaliana HOM05D010227 ORTHO05D012306 8.8e-09 64.7 121 42.1
Thhalv10008533m.g Eutrema salsugineum HOM05D000133 ORTHO05D005407 8.8e-09 64.7 75 57.3
Thhalv10017393m.g Eutrema salsugineum HOM05D010227 ORTHO05D012306 8.8e-09 64.7 121 43.0
Sp1g14130 Schrenkiella parvula HOM05D000133 ORTHO05D005407 8.8e-09 64.7 75 57.3
A06p11890 Brassica napus HOM05D000133 ORTHO05D005407 1.5e-08 63.9 75 57.3
BraA06t24359Z Brassica rapa HOM05D000133 ORTHO05D005407 1.5e-08 63.9 75 57.3
Carub.0001s1561 Capsella rubella HOM05D000133 ORTHO05D005407 2.0e-08 63.5 75 56.0
THA.LOC104808189 Tarenaya hassleriana HOM05D000133 ORTHO05D005407 2.6e-08 63.2 76 55.3
Carub.0004s2499 Capsella rubella HOM05D010227 ORTHO05D012306 3.3e-08 62.8 122 42.6
AL4G41070 Arabidopsis lyrata HOM05D010227 ORTHO05D012306 4.4e-08 62.4 121 41.3
BcaB08g34599 Brassica carinata HOM05D009656 ORTHO05D094495 4.4e-08 62.4 52 67.3
BcaC07g41477 Brassica carinata HOM05D000133 ORTHO05D005407 4.4e-08 62.4 74 56.8
C08p44750 Brassica napus HOM05D000133 ORTHO05D005407 4.4e-08 62.4 74 56.8
BolC8t52021H Brassica oleracea HOM05D000133 ORTHO05D005407 4.4e-08 62.4 74 56.8
A09p61150 Brassica napus HOM05D000133 ORTHO05D005407 7.4e-08 61.6 74 56.8
BraA09t41489Z Brassica rapa HOM05D000133 ORTHO05D005407 7.4e-08 61.6 74 56.8
Aa31LG7G410 Aethionema arabicum HOM05D000133 ORTHO05D005407 1.3e-07 60.8 76 53.9
THA.LOC104812448 Tarenaya hassleriana HOM05D000133 ORTHO05D005407 1.3e-07 60.8 76 52.6
BcaB01g03455 Brassica carinata HOM05D010227 ORTHO05D012306 1.7e-07 60.5 127 37.8
BcaC07g38795 Brassica carinata HOM05D000133 ORTHO05D005407 2.8e-07 59.7 74 56.8
C08p17310 Brassica napus HOM05D000133 ORTHO05D005407 2.8e-07 59.7 74 56.8
BolC8t49357H Brassica oleracea HOM05D000133 ORTHO05D005407 2.8e-07 59.7 74 56.8
BraA03t11585Z Brassica rapa HOM05D010227 ORTHO05D012306 3.7e-07 59.3 131 37.4
A03p23680 Brassica napus HOM05D010227 ORTHO05D012306 4.8e-07 58.9 128 39.1
BcaC01g05276 Brassica carinata HOM05D010227 ORTHO05D012306 8.2e-07 58.2 119 39.5
C03p28260 Brassica napus HOM05D010227 ORTHO05D012306 8.2e-07 58.2 119 39.5
AT2G42540 Arabidopsis thaliana HOM05D010227 ORTHO05D012306 1.8e-06 57.0 121 39.7
BolC3t15199H Brassica oleracea HOM05D010227 ORTHO05D012306 3.1e-06 56.2 119 38.7
AL4G41090 Arabidopsis lyrata HOM05D010227 ORTHO05D012306 5.3e-06 55.5 121 39.7
CARHR137650 Cardamine hirsuta HOM05D010227 ORTHO05D012306 9.1e-06 54.7 80 50.0


User provided reference genes

Program Settings