Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39910 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 4.5e-74 281.2 143 100.0
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 3.1e-67 258.5 142 93.0
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 4.1e-67 258.1 142 93.0
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 4.5e-66 254.6 142 91.5
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 5.9e-66 254.2 142 93.0
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 5.9e-66 254.2 142 92.3
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 7.7e-66 253.8 142 90.8
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 6.5e-65 250.8 142 90.1
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 6.5e-65 250.8 142 90.1
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 6.5e-65 250.8 142 90.1
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 1.1e-64 250.0 142 90.1
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 1.1e-64 250.0 142 90.1
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.9e-64 249.2 142 89.4
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 3.6e-63 245.0 142 88.7
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 3.7e-60 235.0 142 81.7
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 1.2e-58 229.9 142 81.0
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 2.0e-58 229.2 142 79.6
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 5.9e-58 227.6 142 79.6
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 5.9e-58 227.6 142 79.6
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 5.9e-58 227.6 142 79.6
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.0e-57 226.9 142 79.6
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.0e-57 226.9 142 79.6
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 2.9e-57 225.3 142 80.3
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 8.5e-57 223.8 142 78.9
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 3.0e-54 215.3 142 73.9
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 1.5e-53 213.0 142 73.9
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 4.4e-53 211.5 142 71.8
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 7.5e-53 210.7 142 71.8
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 9.7e-53 210.3 142 73.2
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 1.7e-52 209.5 142 72.5
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 2.8e-52 208.8 142 72.5
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 3.7e-52 208.4 142 70.4
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 4.8e-52 208.0 142 71.8
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 4.8e-52 208.0 142 71.8
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 6.3e-52 207.6 142 72.5
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 6.3e-52 207.6 142 71.8
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 8.2e-52 207.2 142 71.1
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 8.2e-52 207.2 142 73.2
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 8.2e-52 207.2 142 72.5
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 8.2e-52 207.2 142 72.5
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 8.2e-52 207.2 142 72.5
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 1.1e-51 206.8 142 71.8
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 1.1e-51 206.8 142 72.5
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 1.4e-51 206.5 142 70.4
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.4e-51 206.5 142 70.4
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 1.8e-51 206.1 142 71.1
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 1.8e-51 206.1 142 70.4
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 2.4e-51 205.7 142 70.4
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 2.4e-51 205.7 142 69.7
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 2.4e-51 205.7 142 69.7
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 2.4e-51 205.7 142 71.1
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 2.4e-51 205.7 142 71.1
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 3.1e-51 205.3 142 71.1
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 3.1e-51 205.3 142 71.1
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 4.1e-51 204.9 142 70.4
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 5.3e-51 204.5 142 70.4
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 5.3e-51 204.5 142 71.1
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 7.0e-51 204.1 142 71.8
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 7.0e-51 204.1 142 71.1
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 7.0e-51 204.1 142 69.7
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 9.1e-51 203.8 142 71.1
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 9.1e-51 203.8 142 71.1
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 9.1e-51 203.8 142 70.4
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 1.2e-50 203.4 141 71.6
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 1.6e-50 203.0 142 69.7
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 1.6e-50 203.0 142 69.7
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 2.0e-50 202.6 142 69.7
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 2.0e-50 202.6 142 69.7
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 2.7e-50 202.2 142 70.4
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.5e-50 201.8 142 69.0
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 4.5e-50 201.4 142 70.4
Eucgr.K02007 Eucalyptus grandis HOM05D003395 ORTHO05D004087 4.5e-50 201.4 142 69.0
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 5.9e-50 201.1 142 71.1
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 7.7e-50 200.7 142 69.7
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.0e-49 200.3 142 71.1
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 1.0e-49 200.3 142 69.7
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 3.8e-49 198.4 142 69.7
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 5.0e-49 198.0 142 69.0
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 6.5e-49 197.6 142 68.3
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 8.5e-49 197.2 141 69.5
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 8.5e-49 197.2 142 68.3
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 8.5e-49 197.2 142 71.1
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 1.1e-48 196.8 142 69.7
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.9e-48 196.1 142 69.7
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 2.5e-48 195.7 142 68.3
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 2.5e-48 195.7 142 68.3
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 3.2e-48 195.3 142 67.6
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 7.2e-48 194.1 142 68.3
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.2e-47 193.4 142 67.6
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 1.6e-47 193.0 142 69.0
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 1.6e-47 193.0 142 67.6
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 2.1e-47 192.6 142 65.5
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 3.6e-47 191.8 142 66.9
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 4.7e-47 191.4 142 65.5
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 8.0e-47 190.7 142 65.5
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 1.0e-46 190.3 142 66.9
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 1.4e-46 189.9 142 65.5
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 1.4e-46 189.9 142 65.5
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 1.8e-46 189.5 142 69.0
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.8e-46 189.5 142 66.2
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 3.0e-46 188.7 142 64.1
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.8e-46 187.2 142 66.2
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 8.8e-46 187.2 171 59.1
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 2.6e-45 185.7 154 63.0
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 5.7e-45 184.5 154 63.0
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 9.8e-45 183.7 142 62.7
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 1.7e-44 183.0 142 62.7
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.1e-43 180.3 142 62.7
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 2.4e-43 179.1 150 63.3
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 5.9e-42 174.5 142 66.9
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 5.9e-42 174.5 160 57.5
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 7.7e-42 174.1 142 62.0
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 1.4e-38 163.3 101 78.2
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 8.9e-38 160.6 142 62.0
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 4.9e-36 154.8 116 64.7
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 1.2e-34 150.2 145 53.8
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 7.8e-34 147.5 142 49.3
Lj3g0025487 Lotus japonicus HOM05D003395 ORTHO05D004087 1.0e-33 147.1 102 73.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.6e-31 139.8 142 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 3.4e-29 132.1 115 57.4
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 1.7e-28 129.8 142 45.8
SHI34713 Sapria himalayana HOM05D003395 ORTHO05D004087 1.6e-26 123.2 131 51.1
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 7.3e-24 114.4 82 65.9
SHI25400 Sapria himalayana HOM05D003395 ORTHO05D004087 4.7e-23 111.7 100 58.0
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 9.8e-21 104.0 141 38.3
SHI20623 Sapria himalayana HOM05D003395 ORTHO05D004087 9.8e-21 104.0 116 49.1
Gohir.A11G310000 Gossypium hirsutum HOM05D003395 ORTHO05D004087 3.7e-20 102.1 69 69.6
SHI34448 Sapria himalayana HOM05D003395 ORTHO05D004087 7.0e-19 97.8 142 42.3
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.0e-17 94.0 142 41.5
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.3e-17 93.6 142 43.0
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 2.3e-17 92.8 61 72.1
PGSC0003DMG402030272 Solanum tuberosum HOM05D003395 ORTHO05D004087 9.5e-16 87.4 62 69.4
CDE11G0065 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 2.8e-15 85.9 82 53.7
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 1.4e-14 83.6 60 66.7
RcHm_v2.0_Chr2g0152371 Rosa chinensis HOM05D003395 ORTHO05D004087 1.8e-14 83.2 69 62.3
SHI27325 Sapria himalayana HOM05D003395 ORTHO05D004087 4.0e-14 82.0 90 50.0
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 5.2e-14 81.6 60 66.7
SHI32634 Sapria himalayana HOM05D003395 ORTHO05D004087 7.5e-13 77.8 104 45.2
SHI40121 Sapria himalayana HOM05D003395 ORTHO05D004087 4.9e-12 75.1 70 52.9
SHI33206 Sapria himalayana HOM05D003395 ORTHO05D004087 3.2e-11 72.4 97 44.3
SHI28043 Sapria himalayana HOM05D003395 ORTHO05D004087 1.0e-09 67.4 62 56.5
FvH4_6g38800 Fragaria vesca HOM05D003395 ORTHO05D004087 9.5e-08 60.8 67 50.7
SHI34459 Sapria himalayana HOM05D003395 ORTHO05D004087 1.6e-07 60.1 66 40.9
AagrBONN_evm.TU.Sc2ySwM_117.866 Anthoceros agrestis HOM05D003395 ORTHO05D004087 4.7e-07 58.5 99 42.4
SHI37551 Sapria himalayana HOM05D003395 ORTHO05D004087 1.4e-06 57.0 62 48.4


User provided reference genes

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