Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.0e-245 852.0 445 100.0
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.4e-230 802.7 448 94.4
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.4e-227 790.8 448 92.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.3e-225 785.4 448 91.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.8e-222 775.8 448 90.6
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.6e-210 736.1 448 88.8
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.0e-209 733.4 445 86.7
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.8e-209 732.6 445 86.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-209 732.6 445 86.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.8e-209 732.6 445 86.1
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.5e-208 729.6 445 86.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.5e-208 728.8 445 86.1
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.6e-194 682.9 451 79.6
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.1e-190 668.7 451 79.6
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.0e-188 663.7 451 78.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.6e-184 649.0 454 77.1
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.6e-184 649.0 452 77.9
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.7e-184 647.9 452 77.2
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.7e-184 647.9 452 77.2
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 3.1e-182 642.1 448 77.2
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.2e-178 630.2 446 75.8
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 8.0e-178 627.5 446 75.8
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.0e-177 627.1 449 75.3
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.8e-175 618.2 435 74.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.3e-172 610.1 452 71.5
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.1e-171 607.1 454 71.4
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.5e-171 606.7 460 70.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 9.4e-171 604.0 433 72.3
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 9.4e-171 604.0 449 71.5
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.2e-170 603.6 452 70.4
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.1e-170 602.8 455 69.7
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 6.1e-170 601.3 455 70.8
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 6.1e-170 601.3 453 69.8
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.7e-169 597.8 456 71.3
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.5e-168 596.7 453 70.4
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.5e-168 596.7 453 68.9
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 3.3e-168 595.5 453 71.1
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.3e-167 593.6 458 70.3
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.3e-167 593.6 456 70.2
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 6.3e-167 591.3 453 69.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 8.3e-167 590.9 452 70.1
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.4e-166 589.3 443 70.7
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.1e-166 588.6 448 69.0
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 7.0e-166 587.8 454 70.0
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 7.0e-166 587.8 448 69.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 7.0e-166 587.8 449 68.8
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 9.1e-166 587.4 453 69.5
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.2e-165 587.0 430 71.6
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.6e-165 586.6 459 69.3
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.0e-165 586.3 454 69.2
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 2.7e-165 585.9 459 69.3
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.7e-164 583.2 441 70.3
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.7e-164 583.2 458 69.4
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.2e-164 582.8 460 67.8
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.9e-164 582.4 451 68.7
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.9e-164 582.4 456 69.7
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.8e-164 582.0 454 68.9
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.8e-164 582.0 453 69.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 3.2e-163 578.9 451 68.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 9.4e-163 577.4 449 68.2
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.6e-162 576.6 449 68.4
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.1e-162 576.2 461 67.7
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.7e-162 575.1 449 68.2
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 6.1e-162 574.7 450 68.0
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 6.1e-162 574.7 448 67.0
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.1e-162 574.7 455 69.0
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 2.3e-161 572.8 452 68.4
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.3e-161 572.8 444 68.0
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.0e-161 572.4 459 66.2
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 4.0e-161 572.0 450 66.4
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.8e-161 571.2 444 67.8
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.5e-160 570.1 439 67.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 2.6e-160 569.3 447 68.7
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.7e-159 566.6 458 67.2
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.8e-159 565.8 362 79.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.7e-159 565.5 454 66.5
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 6.3e-159 564.7 449 66.6
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.8e-158 563.1 461 66.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.0e-157 559.7 359 80.2
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 5.9e-157 558.1 460 64.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.0e-156 557.4 450 66.4
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.3e-156 556.2 447 66.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.9e-156 555.8 427 68.6
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 8.6e-156 554.3 449 65.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.1e-155 553.9 451 63.6
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.3e-155 552.4 456 66.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.3e-155 552.4 456 66.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 3.3e-155 552.4 450 64.9
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.5e-155 551.6 447 67.1
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.2e-154 550.4 380 74.7
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.1e-154 549.7 452 64.2
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.3e-153 546.2 425 67.8
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.5e-152 543.5 442 65.6
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.6e-152 542.7 453 64.7
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 5.4e-150 535.0 427 65.3
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 7.0e-150 534.6 455 62.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 8.0e-146 521.2 362 74.3
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 8.9e-145 517.7 341 74.8
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 2.2e-143 513.1 399 67.4
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.4e-142 509.6 456 62.1
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.3e-131 471.5 448 58.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.2e-126 456.1 308 74.7
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.3e-124 449.9 307 75.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.1e-123 447.6 311 73.0
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.5e-123 447.2 454 56.8
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 7.6e-120 434.9 290 75.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-119 433.7 278 79.1
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 4.2e-118 429.1 371 59.0
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.6e-117 427.2 418 56.7
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 3.5e-117 426.0 426 57.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.5e-115 419.9 384 60.4
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 5.6e-115 418.7 372 57.3
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.9e-111 405.6 369 56.6
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.4e-110 402.1 282 72.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 9.3e-110 401.4 301 68.8
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 4.5e-104 382.5 281 71.2
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.2e-103 380.2 361 57.3
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.4e-102 376.7 248 81.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-97 361.3 364 54.9
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.2e-96 357.8 300 63.0
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.0e-96 357.1 381 52.8
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-94 351.3 448 52.2
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.5e-94 349.0 370 53.2
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 9.3e-94 348.2 361 51.5
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.1e-93 347.1 336 56.2
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 6.5e-87 325.5 369 50.9
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.6e-82 310.8 383 45.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.4e-73 280.4 448 46.4
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 9.4e-62 241.9 221 64.3
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.0e-52 211.8 150 72.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.3e-39 167.5 164 53.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.0e-36 156.8 114 66.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.7e-32 144.1 168 48.8
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-30 138.7 83 75.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.8e-28 131.3 113 58.4
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-25 120.9 171 40.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.7e-23 114.8 72 81.9
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.8e-20 104.8 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 6.0e-16 89.7 102 49.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 6.2e-13 79.7 75 52.0
BolC4t27673H Brassica oleracea HOM05D005300 ORTHO05D006622 8.4e-10 69.3 145 40.0
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.4e-09 68.6 185 33.0
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.4e-09 66.6 56 66.1


User provided reference genes

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