Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G22390 Arabidopsis lyrata HOM05D001688 ORTHO05D001571 3.2e-96 355.1 189 100.0
AT2G27840 Arabidopsis thaliana HOM05D001688 ORTHO05D001571 3.0e-65 252.3 194 75.3
Carub.0004s0860 Capsella rubella HOM05D001688 ORTHO05D001571 2.2e-44 183.0 203 56.2
CARHR120540 Cardamine hirsuta HOM05D001688 ORTHO05D001571 9.6e-24 114.4 85 64.7
BcaC02g08226 Brassica carinata HOM05D001688 ORTHO05D001571 6.4e-20 101.7 137 46.0
BraA04t17686Z Brassica rapa HOM05D001688 ORTHO05D001571 9.3e-19 97.8 137 45.3
BcaB06g28173 Brassica carinata HOM05D001688 ORTHO05D001571 2.1e-18 96.7 133 46.6
C04p57000 Brassica napus HOM05D001688 ORTHO05D001571 6.0e-18 95.1 134 46.3
Aa31LG5G8180 Aethionema arabicum HOM05D001688 ORTHO05D001571 1.0e-17 94.4 230 39.1
Sp4g10680 Schrenkiella parvula HOM05D001688 ORTHO05D001571 3.9e-17 92.4 143 44.1
A04p21170 Brassica napus HOM05D001688 ORTHO05D001571 1.1e-16 90.9 182 41.2
Thhalv10017218m.g Eutrema salsugineum HOM05D001688 ORTHO05D001571 1.1e-16 90.9 198 39.9
BolC4t27235H Brassica oleracea HOM05D001688 ORTHO05D001571 1.4e-14 84.0 163 42.3
THA.LOC104800559 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 3.1e-14 82.8 105 46.7
TWI79G0547 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 3.4e-13 79.3 96 51.0
THA.LOC104814806 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 7.6e-13 78.2 101 48.5
arahy.Tifrunner.gnm1.ann1.63G8L5 Arachis hypogaea HOM05D001688 ORTHO05D001571 2.2e-12 76.6 90 46.7
Ah.01g004650 Amaranthus hybridus HOM05D002481 ORTHO05D002643 2.9e-12 76.3 106 39.6
THA.LOC104810899 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 3.8e-12 75.9 91 49.5
MELO3C021457.2 Cucumis melo HOM05D001688 ORTHO05D001571 1.1e-11 74.3 82 46.3
CsaV3_6G014690 Cucumis sativus L. HOM05D001688 ORTHO05D001571 1.4e-11 73.9 81 46.9
Aa31LG1G12970 Aethionema arabicum HOM05D001688 ORTHO05D001571 1.9e-11 73.6 92 47.8
TAR633G0649 Trochodendron aralioides HOM05D001688 ORTHO05D001571 1.9e-11 73.6 102 42.2
Ciclev10012182m.g Citrus clementina HOM05D001688 ORTHO05D001571 2.5e-11 73.2 92 43.5
THA.LOC104799534 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 2.5e-11 73.2 91 48.4
MELO3C021456.2 Cucumis melo HOM05D001688 ORTHO05D001571 3.2e-11 72.8 81 45.7
TAR636G1096 Trochodendron aralioides HOM05D001688 ORTHO05D001571 4.2e-11 72.4 112 42.0
TAR636G3115 Trochodendron aralioides HOM05D001688 ORTHO05D001571 4.2e-11 72.4 112 42.0
Medtr2g084815 Medicago truncatula HOM05D001688 ORTHO05D001571 5.5e-11 72.0 114 40.4
Atru.chr3.3388 Acer truncatum HOM05D001688 ORTHO05D001571 7.1e-11 71.6 88 45.5
Manes.11G156700 Manihot esculenta HOM05D001688 ORTHO05D001571 7.1e-11 71.6 94 44.7
TWI75G0541 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 9.3e-11 71.2 110 40.0
TAR369G0885 Trochodendron aralioides HOM05D001688 ORTHO05D001571 1.2e-10 70.9 75 46.7
Ah.01g016800 Amaranthus hybridus HOM05D001688 ORTHO05D001571 1.6e-10 70.5 94 41.5
TPR.G32379 Trifolium pratense HOM05D001688 ORTHO05D001571 1.6e-10 70.5 86 45.3
TWI31G0812 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 1.6e-10 70.5 83 45.8
CiPaw.14G103900 Carya illinoinensis HOM05D001688 ORTHO05D001571 2.7e-10 69.7 110 40.9
PGR102G0030 Punica granatum HOM05D001688 ORTHO05D001571 2.7e-10 69.7 96 42.7
Glyma.12G181400 Glycine max HOM05D001688 ORTHO05D001571 3.5e-10 69.3 98 42.9
EL10Ac9g21071 Beta vulgaris HOM05D001688 ORTHO05D001571 4.6e-10 68.9 80 46.2
COL.COLO4_29822 Corchorus olitorius HOM05D001688 ORTHO05D001571 4.6e-10 68.9 134 38.8
Os01g0909150 Oryza sativa ssp. japonica HOM05D001688 ORTHO05D001571 4.6e-10 68.9 80 50.0
Phvul.005G127600 Phaseolus vulgaris HOM05D001688 ORTHO05D001571 4.6e-10 68.9 93 41.9
Actinidia07209 Actinidia chinensis HOM05D001688 ORTHO05D001571 7.9e-10 68.2 100 40.0
Ciclev10028932m.g Citrus clementina HOM05D001688 ORTHO05D001571 1.0e-09 67.8 84 44.0
Sp5g16430 Schrenkiella parvula HOM05D001688 ORTHO05D001571 1.0e-09 67.8 94 42.6
AL5G22980 Arabidopsis lyrata HOM05D001688 ORTHO05D001571 1.3e-09 67.4 93 41.9
CsaV3_6G014670 Cucumis sativus L. HOM05D001688 ORTHO05D001571 1.3e-09 67.4 65 49.2
Lj3g0001709 Lotus japonicus HOM05D001688 ORTHO05D001571 1.3e-09 67.4 93 44.1
Psat7g190640 Pisum sativum HOM05D001688 ORTHO05D001571 1.3e-09 67.4 102 46.1
QL10p041434 Quercus lobata HOM05D001688 ORTHO05D001571 1.3e-09 67.4 82 45.1
Haze_23455 Corylus avellana HOM05D001688 ORTHO05D001571 1.8e-09 67.0 104 43.3
CsaV3_3G036760 Cucumis sativus L. HOM05D001688 ORTHO05D001571 3.9e-09 65.9 93 45.2
Glyma.13G319500 Glycine max HOM05D001688 ORTHO05D001571 3.9e-09 65.9 95 43.2
Zm00001eb365080 Zea mays HOM05D001688 ORTHO05D001571 3.9e-09 65.9 109 40.4
Actinidia24182 Actinidia chinensis HOM05D001688 ORTHO05D001571 5.1e-09 65.5 100 39.0
Sed0011854 Sechium edule HOM05D001688 ORTHO05D001571 5.1e-09 65.5 82 43.9
Sed0023502 Sechium edule HOM05D001688 ORTHO05D001571 5.1e-09 65.5 92 40.2
Zm00001eb365100 Zea mays HOM05D001688 ORTHO05D001571 5.1e-09 65.5 206 31.6
CANSAT80G0408 Cannabis sativa HOM05D001688 ORTHO05D001571 6.7e-09 65.1 79 44.3
Carub.0005s1044 Capsella rubella HOM05D001688 ORTHO05D001571 6.7e-09 65.1 108 37.0
MELO3C009430.2 Cucumis melo HOM05D001688 ORTHO05D001571 6.7e-09 65.1 117 37.6
Manes.09G060536 Manihot esculenta HOM05D001688 ORTHO05D001571 6.7e-09 65.1 124 36.3
Potri.004G188800 Populus trichocarpa HOM05D001688 ORTHO05D001571 6.7e-09 65.1 132 34.8
CANSAT54G1531 Cannabis sativa HOM05D001688 ORTHO05D001571 8.7e-09 64.7 103 42.7
Eucgr.J00421 Eucalyptus grandis HOM05D001688 ORTHO05D001571 8.7e-09 64.7 80 41.2
VMungo1127G1742 Vigna mungo HOM05D001688 ORTHO05D001571 8.7e-09 64.7 91 42.9
GSVIVG01033775001 Vitis vinifera HOM05D001688 ORTHO05D001571 8.7e-09 64.7 81 43.2
Duzib168G1452 Durio zibethinus HOM05D001688 ORTHO05D001571 1.1e-08 64.3 101 39.6
Thhalv10014266m.g Eutrema salsugineum HOM05D001688 ORTHO05D001571 1.1e-08 64.3 95 41.1
Lalb_Chr22g0350621 Lupinus albus HOM05D001688 ORTHO05D001571 1.1e-08 64.3 81 43.2
AUR62038297 Chenopodium quinoa HOM05D001688 ORTHO05D001571 1.5e-08 63.9 78 42.3
Lalb_Chr03g0027901 Lupinus albus HOM05D001688 ORTHO05D001571 1.5e-08 63.9 130 35.4
Sed0003899 Sechium edule HOM05D001688 ORTHO05D001571 1.5e-08 63.9 117 38.5
AL6G33680 Arabidopsis lyrata HOM05D001688 ORTHO05D001571 1.9e-08 63.5 100 42.0
arahy.Tifrunner.gnm1.ann1.DY7VNH Arachis hypogaea HOM05D001688 ORTHO05D001571 1.9e-08 63.5 65 47.7
Duzib170G0280 Durio zibethinus HOM05D001688 ORTHO05D001571 1.9e-08 63.5 93 41.9
Gohir.A05G084101 Gossypium hirsutum HOM05D001688 ORTHO05D001571 1.9e-08 63.5 90 41.1
Psat5g254240 Pisum sativum HOM05D001688 ORTHO05D001571 1.9e-08 63.5 93 40.9
Carub.0006s2037 Capsella rubella HOM05D001688 ORTHO05D001571 2.5e-08 63.2 91 42.9
CAN.G644.35 Capsicum annuum HOM05D001688 ORTHO05D001571 2.5e-08 63.2 101 39.6
Duzib150G0178 Durio zibethinus HOM05D001688 ORTHO05D001571 2.5e-08 63.2 154 34.4
Lalb_Chr14g0374221 Lupinus albus HOM05D001688 ORTHO05D001571 2.5e-08 63.2 81 40.7
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 2.5e-08 63.2 89 43.8
TWI74G1258 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 2.5e-08 63.2 125 34.4
VMungo1080G1713 Vigna mungo HOM05D001688 ORTHO05D001571 2.5e-08 63.2 74 47.3
AT5G22650 Arabidopsis thaliana HOM05D001688 ORTHO05D001571 3.3e-08 62.8 89 43.8
BolC2t07186H Brassica oleracea HOM05D001688 ORTHO05D001571 3.3e-08 62.8 88 39.8
CiPaw.09G008200 Carya illinoinensis HOM05D001688 ORTHO05D001571 3.3e-08 62.8 121 33.1
Gohir.D05G086900 Gossypium hirsutum HOM05D001688 ORTHO05D001571 3.3e-08 62.8 90 40.0
Carub.0015s0001 Capsella rubella HOM05D001688 ORTHO05D001571 4.3e-08 62.4 75 42.7
Gohir.A09G092600 Gossypium hirsutum HOM05D001688 ORTHO05D001571 4.3e-08 62.4 103 39.8
Lalb_Chr20g0112191 Lupinus albus HOM05D001688 ORTHO05D001571 4.3e-08 62.4 77 48.1
Thecc.05G080400 Theobroma cacao HOM05D001688 ORTHO05D001571 4.3e-08 62.4 96 45.8
AUR62023943 Chenopodium quinoa HOM05D000013 ORTHO05D001571 5.7e-08 62.0 78 41.0
Dinv19823 Davidia involucrata HOM05D001688 ORTHO05D001571 5.7e-08 62.0 117 38.5
Glyma.11G189500 Glycine max HOM05D001688 ORTHO05D001571 5.7e-08 62.0 95 41.1
Os05g0597100 Oryza sativa ssp. japonica HOM05D001688 ORTHO05D001571 5.7e-08 62.0 89 40.4
Potri.009G149400 Populus trichocarpa HOM05D001688 ORTHO05D001571 5.7e-08 62.0 102 38.2
Prupe.7G118500 Prunus persica HOM05D001688 ORTHO05D001571 5.7e-08 62.0 89 42.7
BcaB05g22708 Brassica carinata HOM05D001688 ORTHO05D001571 7.4e-08 61.6 90 40.0
BcaC03g13906 Brassica carinata HOM05D001688 ORTHO05D001571 7.4e-08 61.6 86 39.5
C02p11140 Brassica napus HOM05D001688 ORTHO05D001571 7.4e-08 61.6 86 39.5
Ca_01682_v3 Cicer arietinum L. HOM05D001688 ORTHO05D001571 7.4e-08 61.6 180 28.9
Lj1g0014712 Lotus japonicus HOM05D001688 ORTHO05D001571 7.4e-08 61.6 78 44.9
MBI17_g11106_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 7.4e-08 61.6 79 39.2
Sabra04G0129300 Salix brachista HOM05D001688 ORTHO05D001571 7.4e-08 61.6 132 34.1
Sabra18G0094500 Salix brachista HOM05D001688 ORTHO05D001571 7.4e-08 61.6 132 34.1
Thecc.09G292300 Theobroma cacao HOM05D001688 ORTHO05D001571 7.4e-08 61.6 99 35.4
Gorai.009G088600 Gossypium raimondii HOM05D001688 ORTHO05D001571 9.7e-08 61.2 81 43.2
Medtr4g055440 Medicago truncatula HOM05D001688 ORTHO05D001571 9.7e-08 61.2 151 35.8
Sabra09G0118000 Salix brachista HOM05D001688 ORTHO05D001571 9.7e-08 61.2 129 37.2
GSVIVG01031404001 Vitis vinifera HOM05D001688 ORTHO05D001571 9.7e-08 61.2 85 37.6
BraA02t05679Z Brassica rapa HOM05D001688 ORTHO05D001571 1.3e-07 60.8 86 39.5
DCAR_015480 Daucus carota HOM05D001688 ORTHO05D001571 1.3e-07 60.8 77 42.9
DCAR_018742 Daucus carota HOM05D001688 ORTHO05D001571 1.3e-07 60.8 103 36.9
Duzib093G2204 Durio zibethinus HOM05D001688 ORTHO05D001571 1.3e-07 60.8 96 42.7
BNapus_Darmor_BZH_scaffold_38p00470 Brassica napus HOM05D001688 ORTHO05D001571 1.6e-07 60.5 86 39.5
C09p53920 Brassica napus HOM05D001688 ORTHO05D001571 1.6e-07 60.5 95 40.0
BolC9t58264H Brassica oleracea HOM05D001688 ORTHO05D001571 1.6e-07 60.5 95 40.0
Lj3g0018637 Lotus japonicus HOM05D001688 ORTHO05D001571 1.6e-07 60.5 102 41.2
MBI07_g25281_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 1.6e-07 60.5 79 39.2
PSO339G5760 Papaver somniferum HOM05D001688 ORTHO05D001571 1.6e-07 60.5 93 44.1
Sed0027387 Sechium edule HOM05D001688 ORTHO05D001571 1.6e-07 60.5 84 42.9
PGSC0003DMG400002221 Solanum tuberosum HOM05D001688 ORTHO05D001571 1.6e-07 60.5 101 38.6
CSS0026506 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 2.2e-07 60.1 96 39.6
Ca_08965_v3 Cicer arietinum L. HOM05D001688 ORTHO05D001571 2.2e-07 60.1 168 31.0
MD03G1134400 Malus domestica HOM05D001688 ORTHO05D001571 2.2e-07 60.1 82 37.8
PGR119G1578 Punica granatum HOM05D001688 ORTHO05D001571 2.2e-07 60.1 99 34.3
Sopen11g026550 Solanum pennellii HOM05D001688 ORTHO05D001571 2.2e-07 60.1 101 37.6
Aa31LG1G21510 Aethionema arabicum HOM05D001688 ORTHO05D001571 2.8e-07 59.7 90 43.3
Glyma.12G084700 Glycine max HOM05D001688 ORTHO05D001571 2.8e-07 59.7 109 39.4
MBI16_g01007_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 2.8e-07 59.7 78 39.7
PGSC0003DMG400026532 Solanum tuberosum HOM05D001688 ORTHO05D001571 2.8e-07 59.7 101 37.6
Zm00001eb356490 Zea mays HOM05D001688 ORTHO05D001571 2.8e-07 59.7 133 33.8
Atru.chr8.1641 Acer truncatum HOM05D001688 ORTHO05D001571 3.7e-07 59.3 124 36.3
Cc06_g05200 Coffea canephora HOM05D001688 ORTHO05D001571 3.7e-07 59.3 84 39.3
HanXRQChr02g0054811 Helianthus annuus HOM05D001688 ORTHO05D001571 3.7e-07 59.3 86 39.5
Phvul.011G090000 Phaseolus vulgaris HOM05D001688 ORTHO05D001571 3.7e-07 59.3 91 40.7
Rhsim01G0208600 Rhododendron simsii HOM05D001688 ORTHO05D001571 3.7e-07 59.3 77 46.8
CSS0033564 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 6.3e-07 58.5 115 37.4
MBI16_g38690_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 6.3e-07 58.5 79 38.0
MSTRG.10350 Avicennia marina HOM05D001688 ORTHO05D001571 8.2e-07 58.2 112 36.6
Pp3c1_23930 Physcomitrium patens HOM05D001688 ORTHO05D001571 8.2e-07 58.2 90 40.0
Psat6g059360 Pisum sativum HOM05D001688 ORTHO05D001571 8.2e-07 58.2 87 43.7
MBI05_g37577_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 1.1e-06 57.8 108 38.9
CSS0048567 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 1.4e-06 57.4 75 45.3
Glyma.03G190700 Glycine max HOM05D001688 ORTHO05D001571 1.4e-06 57.4 77 41.6
Pp3c2_11820 Physcomitrium patens HOM05D001688 ORTHO05D001571 1.4e-06 57.4 84 42.9
Hund07702 Selenicereus undatus HOM05D001688 ORTHO05D001571 1.8e-06 57.0 83 39.8
Sc21g0004690 Simmondsia chinensis HOM05D001688 ORTHO05D001571 1.8e-06 57.0 117 36.8
PGSC0003DMG400002684 Solanum tuberosum HOM05D001688 ORTHO05D001571 1.8e-06 57.0 86 36.0
PGSC0003DMG400008398 Solanum tuberosum HOM05D001688 ORTHO05D001571 1.8e-06 57.0 86 38.4
EL10Ac9g21072 Beta vulgaris HOM05D001688 ORTHO05D001571 2.4e-06 56.6 131 38.2
PSO384G0416 Papaver somniferum HOM05D001688 ORTHO05D001571 2.4e-06 56.6 122 36.1
PSO832G2513 Papaver somniferum HOM05D001688 ORTHO05D001571 2.4e-06 56.6 122 36.9
Solyc09g009030.4 Solanum lycopersicum HOM05D001688 ORTHO05D001571 2.4e-06 56.6 87 35.6
TPR.G10243 Trifolium pratense HOM05D001688 ORTHO05D001571 2.4e-06 56.6 120 35.8
Thhalv10002782m.g Eutrema salsugineum HOM05D001688 ORTHO05D001571 3.1e-06 56.2 76 43.4
Gohir.A07G188301 Gossypium hirsutum HOM05D000331 ORTHO05D001571 3.1e-06 56.2 98 37.8
Gohir.D01G198600 Gossypium hirsutum HOM05D001688 ORTHO05D001571 3.1e-06 56.2 89 41.6
Lj2C128T7 Lonicera japonica HOM05D001688 ORTHO05D001571 3.1e-06 56.2 76 39.5
Oeu008380.1 Olea europaea HOM05D001688 ORTHO05D001571 3.1e-06 56.2 72 40.3
Sc20g0006000 Simmondsia chinensis HOM05D001688 ORTHO05D001571 3.1e-06 56.2 76 40.8
CARHR190930 Cardamine hirsuta HOM05D001688 ORTHO05D001571 4.1e-06 55.8 81 40.7
Phvul.001G186300 Phaseolus vulgaris HOM05D001688 ORTHO05D001571 4.1e-06 55.8 77 40.3
BNapus_Darmor_BZH_scaffold_38p00500 Brassica napus HOM05D001688 ORTHO05D001571 5.3e-06 55.5 93 39.8
Ca_19368_v3 Cicer arietinum L. HOM05D001688 ORTHO05D001571 5.3e-06 55.5 157 30.6
BcaC03g13904 Brassica carinata HOM05D025641 ORTHO05D027280 6.9e-06 55.1 89 40.4
C02p11090 Brassica napus HOM05D001688 ORTHO05D001571 6.9e-06 55.1 89 40.4
Cfa016530 Carpinus fangiana HOM05D001688 ORTHO05D001571 6.9e-06 55.1 73 39.7
CiPaw.13G141200 Carya illinoinensis HOM05D001688 ORTHO05D001571 6.9e-06 55.1 84 38.1
FAN14G1368 Fragaria x ananassa HOM05D001688 ORTHO05D001571 6.9e-06 55.1 88 36.4
Glyma.19G191000 Glycine max HOM05D001688 ORTHO05D001571 6.9e-06 55.1 77 40.3
Sp6g22690 Schrenkiella parvula HOM05D001688 ORTHO05D001571 6.9e-06 55.1 88 38.6
vmacro03280 Vaccinium macrocarpon HOM05D001688 ORTHO05D001571 6.9e-06 55.1 75 40.0
BcaB05g22711 Brassica carinata HOM05D001688 ORTHO05D001571 9.0e-06 54.7 129 34.1
BcaB05g22713 Brassica carinata HOM05D001688 ORTHO05D001571 9.0e-06 54.7 96 38.5
Prupe.6G118700 Prunus persica HOM05D001688 ORTHO05D001571 9.0e-06 54.7 128 37.5
Sopen10g034970 Solanum pennellii HOM05D001688 ORTHO05D001571 9.0e-06 54.7 84 39.3


User provided reference genes

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