Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 3.8e-114 414.8 207 100.0
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.0e-111 406.8 207 97.6
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 1.6e-109 399.4 207 95.2
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 2.7e-104 382.1 207 91.8
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 3.5e-104 381.7 207 92.3
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 3.9e-103 378.3 208 90.4
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 3.9e-103 378.3 208 90.4
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.9e-102 375.9 208 89.4
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.9e-102 375.9 208 89.4
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.9e-102 375.9 208 89.4
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 3.7e-101 371.7 208 88.9
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 1.1e-100 370.2 207 88.9
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.6e-93 346.3 209 81.8
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 6.3e-93 344.4 192 87.5
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 8.8e-87 323.9 208 74.5
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.5e-86 323.2 207 74.4
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.5e-86 323.2 208 76.0
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.3e-85 320.1 208 75.0
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 2.2e-85 319.3 208 75.0
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.2e-85 319.3 208 75.0
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 3.7e-85 318.5 208 75.0
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 6.3e-85 317.8 207 73.4
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 8.2e-85 317.4 208 73.6
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.4e-84 316.6 208 74.0
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 1.4e-84 316.6 208 75.0
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 1.8e-84 316.2 207 71.5
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.8e-84 316.2 209 75.6
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.8e-84 316.2 208 73.6
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 3.1e-84 315.5 208 73.1
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 3.1e-84 315.5 208 74.5
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 3.1e-84 315.5 207 73.9
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 5.3e-84 314.7 208 73.6
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 9.1e-84 313.9 208 74.0
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.2e-83 313.5 208 72.6
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.5e-83 313.2 208 74.0
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 1.5e-83 313.2 207 73.4
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 2.0e-83 312.8 207 72.5
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.6e-83 312.4 208 71.6
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 4.5e-83 311.6 208 72.1
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 5.9e-83 311.2 207 71.5
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 7.7e-83 310.8 208 73.1
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 7.7e-83 310.8 208 70.7
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 1.0e-82 310.5 208 71.2
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.3e-82 310.1 207 72.5
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.7e-82 309.7 208 70.7
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.2e-82 309.3 208 71.6
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.9e-82 308.9 206 72.3
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 2.9e-82 308.9 208 71.6
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 2.9e-82 308.9 211 73.5
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 3.8e-82 308.5 207 72.5
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 5.0e-82 308.1 208 70.7
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 6.5e-82 307.8 208 70.2
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 8.5e-82 307.4 208 71.2
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.1e-81 307.0 208 72.6
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.4e-81 306.6 219 70.8
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.4e-81 306.6 208 72.6
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.4e-81 306.6 207 69.6
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.9e-81 306.2 210 71.9
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 3.2e-81 305.4 209 70.8
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 4.2e-81 305.1 207 69.6
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 7.2e-81 304.3 209 72.2
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 1.6e-80 303.1 209 69.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 1.6e-80 303.1 211 69.7
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.1e-80 302.8 208 70.2
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 2.1e-80 302.8 208 68.8
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 2.1e-80 302.8 208 69.7
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 4.7e-80 301.6 203 71.4
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 4.7e-80 301.6 207 69.6
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 7.9e-80 300.8 209 70.3
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 7.9e-80 300.8 208 68.8
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.0e-79 300.4 210 69.0
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 5.1e-79 298.1 209 70.3
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 6.7e-79 297.7 207 70.0
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 8.8e-79 297.4 207 70.0
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 1.1e-78 297.0 207 68.6
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.5e-78 296.6 208 70.7
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 2.0e-78 296.2 208 70.2
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 8.2e-77 290.8 207 70.0
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.4e-76 290.0 207 68.1
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 2.4e-76 289.3 208 67.8
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 3.1e-76 288.9 207 65.7
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 5.3e-76 288.1 207 69.6
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 6.9e-76 287.7 243 60.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.5e-75 285.0 191 72.8
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 7.7e-75 284.3 207 68.6
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.3e-74 283.5 188 73.4
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 2.5e-73 279.3 208 65.9
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 7.2e-73 277.7 183 71.6
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.8e-71 273.1 205 64.4
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.0e-71 272.3 193 69.9
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 3.7e-69 265.4 209 66.0
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.2e-67 260.4 201 62.2
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.7e-66 256.5 159 74.2
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 2.5e-65 252.7 149 77.9
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.2e-64 250.4 175 69.1
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 2.3e-63 246.1 147 79.6
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 8.8e-63 244.2 148 76.4
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.0e-62 243.0 148 76.4
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 2.7e-59 232.6 147 71.4
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.5e-57 226.9 205 57.6
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.4e-55 220.3 208 58.7
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.6e-54 216.1 204 54.9
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.3e-53 213.8 205 54.1
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 3.7e-53 212.2 192 58.3
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 1.5e-46 190.3 117 69.2
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 4.3e-41 172.2 184 53.8
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.2e-38 164.1 107 75.7
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 3.5e-35 152.5 134 61.2
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 1.0e-34 151.0 209 40.2
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.4e-31 140.6 167 46.1
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 5.8e-30 135.2 111 59.5
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 1.4e-28 130.6 110 61.8
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 4.1e-28 129.0 82 76.8
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 7.3e-25 118.2 156 41.0
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 7.8e-19 98.2 59 78.0
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.7e-18 97.1 132 41.7
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.2e-12 76.3 59 59.3
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 2.7e-11 73.2 156 32.1
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 3.3e-09 66.2 55 60.0
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 3.3e-09 66.2 55 60.0
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 4.0e-07 59.3 35 82.9
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 4.0e-07 59.3 79 45.6
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 1.5e-06 57.4 83 43.4
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 4.4e-06 55.8 35 74.3


User provided reference genes

Program Settings