Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 2.8e-115 418.7 220 100.0
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 3.7e-112 408.3 218 98.6
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 9.2e-111 403.7 220 96.4
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 2.1e-110 402.5 218 96.8
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 3.5e-110 401.7 218 93.1
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 9.6e-108 393.7 219 96.3
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 9.6e-108 393.7 219 96.3
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 3.6e-107 391.7 219 95.9
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 4.7e-107 391.3 219 95.4
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 4.7e-107 391.3 219 95.4
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 4.0e-106 388.3 219 95.0
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 3.2e-103 378.6 219 91.8
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.2e-103 378.6 218 88.1
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 3.3e-100 368.6 218 86.7
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 5.3e-98 361.3 217 83.4
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 9.0e-98 360.5 218 83.9
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 9.0e-98 360.5 218 83.9
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 9.0e-98 360.5 218 81.2
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 7.6e-97 357.5 218 81.2
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 9.9e-97 357.1 218 81.2
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 2.2e-96 355.9 218 83.0
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 3.8e-96 355.1 218 83.5
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 6.4e-96 354.4 218 80.3
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 8.4e-96 354.0 218 82.6
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 8.4e-96 354.0 218 82.6
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 8.4e-96 354.0 218 82.6
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 8.4e-96 354.0 218 82.6
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.4e-96 354.0 218 82.6
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 8.4e-96 354.0 218 82.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 79.3
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.9e-95 352.8 218 79.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.2e-95 352.1 215 80.9
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.2e-95 352.1 218 82.1
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.2e-95 352.1 218 83.0
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 3.2e-95 352.1 218 82.1
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 3.2e-95 352.1 216 80.6
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 4.2e-95 351.7 218 79.4
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 7.1e-95 350.9 218 81.2
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 7.1e-95 350.9 218 82.1
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 9.3e-95 350.5 218 81.2
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 9.3e-95 350.5 220 84.1
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.6e-94 349.7 220 81.8
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.1e-94 349.4 218 80.3
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 2.7e-94 349.0 218 82.1
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 2.7e-94 349.0 218 79.4
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 79.8
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 78.0
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 79.8
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 78.0
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 3.5e-94 348.6 219 79.0
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 4.6e-94 348.2 218 80.7
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 6.0e-94 347.8 218 78.0
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 7.9e-94 347.4 218 79.4
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.0e-93 347.1 277 69.3
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 1.0e-93 347.1 217 81.1
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 1.3e-93 346.7 218 79.4
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 2.3e-93 345.9 218 80.7
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 3.0e-93 345.5 218 77.5
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 3.0e-93 345.5 217 81.1
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 6.6e-93 344.4 218 81.7
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 8.7e-93 344.0 218 80.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 8.7e-93 344.0 215 77.7
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 8.7e-93 344.0 215 77.7
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.1e-92 343.6 219 77.6
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 1.1e-92 343.6 219 79.5
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.5e-92 343.2 215 77.2
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.5e-92 343.2 218 81.7
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.9e-92 342.8 215 77.2
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.3e-92 341.7 211 80.1
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 5.6e-92 341.3 218 77.1
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.3e-91 340.1 211 79.6
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.6e-91 339.7 217 78.8
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 2.1e-91 339.3 220 77.3
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 3.6e-91 338.6 218 79.4
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 3.6e-91 338.6 217 78.3
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 6.2e-91 337.8 223 75.8
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.1e-90 337.0 218 81.2
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.4e-90 336.7 214 78.0
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.8e-90 336.3 218 75.7
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 1.8e-90 336.3 207 82.6
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 9.0e-90 334.0 207 79.2
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 3.4e-89 332.0 220 77.3
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.5e-89 331.6 209 81.3
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.3e-88 330.1 202 79.2
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.3e-88 330.1 218 73.9
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 1.1e-87 327.0 207 78.7
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.9e-87 326.2 202 79.2
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.2e-87 325.1 202 78.2
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 5.5e-87 324.7 218 73.4
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 5.5e-87 324.7 206 76.7
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.6e-86 323.2 206 79.1
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.1e-86 322.8 218 72.9
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 2.7e-86 322.4 294 60.9
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.7e-86 322.4 221 73.3
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 3.5e-86 322.0 221 75.1
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 3.5e-86 322.0 207 77.8
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.3e-85 320.1 215 74.9
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 2.3e-85 319.3 211 78.2
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 1.6e-83 313.2 215 71.2
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 4.8e-83 311.6 215 70.7
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 1.1e-82 310.5 196 78.1
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 3.1e-82 308.9 215 70.2
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 3.4e-81 305.4 213 68.1
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 3.4e-81 305.4 218 71.6
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.3e-80 303.5 215 71.6
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.5e-79 299.3 201 71.1
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 6.3e-75 284.6 185 74.6
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 5.3e-74 281.6 185 76.8
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.6e-73 279.3 173 78.0
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.4e-71 273.5 219 58.4
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.4e-71 273.5 201 68.7
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 4.2e-71 271.9 202 64.4
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 2.1e-70 269.6 164 78.0
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 4.6e-70 268.5 174 75.3
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.5e-65 251.9 202 59.9
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.5e-60 236.9 220 62.3
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 3.1e-58 229.2 210 54.3
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 5.0e-56 221.9 139 74.8
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 7.2e-55 218.0 145 75.9
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 6.1e-54 214.9 212 54.2
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.5e-52 210.3 145 71.7
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-50 203.0 176 61.9
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 7.2e-47 191.4 110 81.8
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 6.1e-46 188.3 215 49.3
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.0e-45 186.0 137 71.5
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 4.4e-44 182.2 119 74.8
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.1e-42 175.6 162 52.5
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 4.1e-42 175.6 174 52.9
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 7.7e-33 144.8 217 42.9
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.2e-28 131.0 91 73.6
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 2.4e-26 123.2 84 75.0
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 5.6e-23 112.1 96 68.8
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.1e-22 110.2 56 96.4
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 2.0e-17 93.6 66 77.3
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 5.9e-17 92.0 50 88.0
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 7.8e-17 91.7 47 89.4
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 3.9e-16 89.4 53 75.5
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 8.3e-11 71.6 88 44.3
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 2.3e-08 63.5 34 91.2
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 6.6e-08 62.0 34 91.2


User provided reference genes

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