Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 0.0e+00 1148.7 560 100.0
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 0.0e+00 1122.5 560 97.7
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 0.0e+00 1081.6 561 93.2
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 7.9e-308 1059.7 546 94.0
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.1e-301 1039.3 554 91.7
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 6.9e-296 1020.0 566 88.0
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.6e-292 1008.8 560 86.8
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 2.7e-292 1008.1 552 89.5
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 2.7e-292 1008.1 552 89.7
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 2.7e-292 1008.1 552 89.5
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 3.6e-292 1007.7 552 89.7
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 6.7e-291 1003.4 553 89.3
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 6.9e-288 993.4 518 94.2
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.5e-282 975.7 560 84.1
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 5.3e-280 967.2 556 83.6
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 5.0e-278 960.7 565 82.7
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 4.2e-277 957.6 544 87.3
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 4.7e-276 954.1 557 82.6
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 4.7e-276 954.1 565 81.8
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.4e-275 952.6 561 82.5
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 2.8e-273 944.9 566 81.1
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-272 943.0 566 81.4
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.1e-272 943.0 566 80.9
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.8e-272 942.2 566 81.1
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 5.3e-272 940.6 566 80.9
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 9.1e-272 939.9 566 80.7
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 1.2e-271 939.5 554 79.6
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 1.0e-270 936.4 564 78.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 2.2e-270 935.3 546 80.2
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.9e-270 934.9 560 77.7
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 1.9e-269 932.2 555 78.9
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 9.4e-269 929.9 546 80.0
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.2e-268 929.5 556 79.5
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.6e-268 929.1 546 79.9
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 2.7e-268 928.3 549 78.9
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 3.6e-268 927.9 559 77.6
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 6.1e-268 927.2 555 78.4
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 8.0e-268 926.8 546 79.1
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.8e-267 925.6 562 80.8
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 3.0e-267 924.9 546 79.5
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.0e-267 924.5 546 79.5
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 5.2e-267 924.1 566 77.2
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.4e-266 921.0 555 78.4
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 5.7e-266 920.6 554 77.4
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 2.8e-265 918.3 546 78.9
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 1.1e-264 916.4 532 80.1
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.8e-264 915.6 531 80.8
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 2.4e-264 915.2 546 78.6
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.6e-263 912.5 546 78.2
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.0e-263 912.1 535 80.4
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 7.7e-263 910.2 560 76.1
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 3.2e-261 904.8 553 76.3
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 4.2e-261 904.4 546 77.7
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 5.5e-261 904.0 555 77.1
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 7.2e-261 903.7 553 77.0
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 7.2e-261 903.7 555 77.1
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 9.5e-261 903.3 546 77.5
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.2e-260 902.9 556 77.5
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.0e-260 900.2 531 79.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 8.0e-260 900.2 567 76.2
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 8.8e-259 896.7 561 76.6
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.5e-258 896.0 561 76.6
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.7e-257 891.3 524 79.4
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 6.3e-257 890.6 545 76.1
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 3.1e-256 888.3 583 73.1
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 9.2e-256 886.7 562 78.5
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 9.2e-256 886.7 545 76.3
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 2.7e-255 885.2 562 74.4
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 3.5e-255 884.8 546 75.6
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 3.5e-255 884.8 549 75.6
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 3.5e-255 884.8 546 76.0
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 5.9e-255 884.0 563 75.0
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 5.9e-255 884.0 555 75.3
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 7.7e-255 883.6 550 74.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 2.3e-254 882.1 549 74.5
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 3.8e-254 881.3 532 77.4
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.5e-253 879.4 532 77.3
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.3e-253 878.2 557 75.6
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 5.6e-253 877.5 578 72.1
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 5.6e-253 877.5 554 74.2
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 7.3e-253 877.1 556 75.9
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.2e-252 876.3 546 74.9
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 2.1e-252 875.5 544 75.4
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 8.0e-252 873.6 517 78.7
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.8e-251 872.5 546 74.4
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.0e-251 871.7 544 75.7
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 5.2e-251 870.9 532 76.3
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.2e-250 869.8 532 76.1
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.5e-250 869.4 556 73.6
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.6e-250 868.6 542 75.3
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 3.4e-250 868.2 547 73.7
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 4.4e-250 867.8 564 73.2
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 3.7e-249 864.8 542 73.8
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 4.1e-248 861.3 548 74.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 3.5e-247 858.2 567 73.4
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 7.8e-247 857.1 544 73.3
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 3.0e-246 855.1 544 73.3
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 3.3e-245 851.7 546 72.5
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.3e-245 851.3 555 73.5
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 9.5e-245 850.1 533 75.4
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.2e-244 849.7 531 75.0
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 1.6e-244 849.4 532 74.1
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.4e-243 846.3 546 73.4
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 2.3e-243 845.5 542 73.6
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 4.0e-243 844.7 557 70.0
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.5e-242 842.8 584 70.5
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 3.4e-242 841.6 546 72.2
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.0e-239 832.4 556 70.9
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.7e-239 832.0 544 72.4
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.6e-239 831.2 507 78.3
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 9.5e-237 823.5 541 72.1
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-234 816.6 517 77.0
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.7e-233 812.8 522 73.0
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.4e-232 808.9 545 70.8
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 2.5e-229 798.9 495 77.2
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 3.2e-224 781.9 514 72.4
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.4e-219 766.5 534 71.0
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 6.9e-219 764.2 539 69.0
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 4.4e-218 761.5 539 69.2
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.1e-215 752.7 512 70.9
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.7e-214 749.6 561 65.4
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 6.4e-209 731.1 554 63.9
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.0e-207 724.5 555 65.0
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.4e-200 702.6 475 71.4
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.2e-194 683.7 567 61.4
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 2.0e-194 682.9 552 62.3
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.8e-193 678.7 578 60.4
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 8.7e-190 667.5 416 77.2
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 9.0e-187 657.5 543 59.5
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 7.2e-144 515.0 327 75.8
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 4.0e-134 482.6 278 79.9
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.2e-132 476.9 305 73.4
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-130 471.1 350 66.3
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 6.6e-129 465.3 263 85.2
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 4.6e-122 442.6 528 49.4
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.1e-119 433.7 330 65.5
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-106 391.3 294 65.3
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-94 351.7 217 75.6
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.1e-94 351.7 288 59.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.3e-94 349.4 217 68.7
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.0e-89 335.1 283 59.4
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 9.9e-85 318.5 252 65.9
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 8.7e-81 305.4 561 34.4
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 4.2e-75 286.6 198 69.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.7e-72 276.2 201 67.2
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 5.9e-61 239.6 460 32.4
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.4e-57 228.4 145 67.6
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.4e-54 217.6 228 48.7
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 4.1e-46 190.3 125 71.2
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 8.8e-33 146.0 128 53.9
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 9.8e-32 142.5 106 62.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 3.7e-31 140.6 100 63.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.4e-30 138.7 106 59.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 8.6e-28 129.4 82 69.5
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 8.9e-25 119.4 81 64.2
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 2.0e-21 108.2 102 54.9
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.4e-17 95.5 56 75.0
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.5e-16 92.0 54 68.5
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 6.2e-10 70.1 43 69.8
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 2.6e-08 64.7 63 42.9
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 4.4e-08 63.9 71 46.5
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 9.8e-08 62.8 80 33.8
COL.COLO4_10976 Corchorus olitorius HOM05D000082 ORTHO05D008126 3.2e-06 57.8 75 34.7
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 3.2e-06 57.8 63 36.5
Gohir.A09G015300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gohir.D09G013700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gohir.D09G013800 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gorai.006G015900 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.4e-06 57.0 51 39.2
COL.COLO4_00142 Corchorus olitorius HOM05D000082 ORTHO05D000038 7.0e-06 56.6 72 38.9
COL.COLO4_16606 Corchorus olitorius HOM05D000082 ORTHO05D000038 7.0e-06 56.6 72 38.9
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 7.0e-06 56.6 68 36.8
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.0e-06 56.6 68 36.8
CDE04G2102 Ceratophyllum demersum HOM05D000082 ORTHO05D001639 9.2e-06 56.2 59 33.9
Gohir.A05G317400 Gossypium hirsutum HOM05D000082 ORTHO05D008126 9.2e-06 56.2 77 31.2
Lalb_Chr19g0125231 Lupinus albus HOM05D000082 ORTHO05D001639 9.2e-06 56.2 56 39.3
Potri.011G119900 Populus trichocarpa HOM05D000354 ORTHO05D001065 9.2e-06 56.2 48 37.5
Sabra11G0104300 Salix brachista HOM05D000157 ORTHO05D001065 9.2e-06 56.2 48 37.5
TPR.G18937 Trifolium pratense HOM05D000082 ORTHO05D000038 9.2e-06 56.2 63 36.5


User provided reference genes

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