Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.5e-58 229.2 106 100.0
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 7.5e-50 200.3 94 98.9
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.2e-49 198.7 105 84.8
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 8.5e-46 186.8 105 80.0
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.9e-45 185.7 105 79.0
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 3.2e-45 184.9 105 79.0
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 3.2e-45 184.9 105 79.0
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.5e-45 184.1 95 87.4
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 8.0e-44 180.3 103 77.7
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 2.3e-43 178.7 104 76.9
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-43 178.7 101 78.2
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 2.3e-43 178.7 101 78.2
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 3.0e-43 178.3 100 78.0
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 3.0e-43 178.3 100 78.0
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 3.0e-43 178.3 100 78.0
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.0e-43 177.9 101 77.2
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.5e-42 176.0 101 76.2
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.5e-42 176.0 101 76.2
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 2.0e-42 175.6 101 76.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.0e-42 175.6 101 76.2
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 3.4e-42 174.9 101 75.2
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 3.4e-42 174.9 105 80.0
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.4e-42 174.9 101 76.2
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 4.4e-42 174.5 101 75.2
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 4.4e-42 174.5 101 75.2
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 4.4e-42 174.5 101 75.2
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 9.8e-42 173.3 100 75.0
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.7e-41 172.6 101 74.3
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 4.1e-40 167.9 101 71.3
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 9.2e-40 166.8 99 68.7
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.6e-39 166.0 101 71.3
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 2.0e-39 165.6 99 69.7
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.7e-39 165.2 100 72.0
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 3.5e-39 164.9 102 70.6
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 5.9e-39 164.1 98 70.4
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 5.9e-39 164.1 97 69.1
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 7.8e-39 163.7 101 71.3
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.0e-38 163.3 97 68.0
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 1.3e-38 162.9 99 67.7
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.3e-38 162.9 97 69.1
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.7e-38 162.5 99 68.7
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 2.3e-38 162.2 97 69.1
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 2.3e-38 162.2 96 71.9
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 2.9e-38 161.8 100 68.0
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 3.8e-38 161.4 96 69.8
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 5.0e-38 161.0 102 67.6
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 6.6e-38 160.6 96 69.8
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 6.6e-38 160.6 100 67.0
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 8.6e-38 160.2 101 72.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 8.6e-38 160.2 99 68.7
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 8.6e-38 160.2 101 68.3
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.5e-37 159.5 96 68.8
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.5e-37 159.5 96 69.8
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 1.5e-37 159.5 97 70.1
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.5e-37 159.5 97 71.1
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.9e-37 159.1 100 69.0
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.9e-37 159.1 97 70.1
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.9e-37 159.1 97 70.1
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 3.3e-37 158.3 96 67.7
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 3.3e-37 158.3 105 65.7
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 4.3e-37 157.9 101 65.3
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 5.6e-37 157.5 96 66.7
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 5.6e-37 157.5 97 69.1
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 9.5e-37 156.8 101 63.4
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 9.5e-37 156.8 97 70.1
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 9.5e-37 156.8 96 67.7
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 9.5e-37 156.8 94 70.2
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.2e-36 156.4 96 68.8
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 1.6e-36 156.0 96 68.8
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.6e-36 156.0 101 63.4
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.6e-36 156.0 99 67.7
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 1.6e-36 156.0 96 69.8
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 2.1e-36 155.6 97 69.1
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.1e-36 155.6 96 66.7
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.1e-36 155.6 96 66.7
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.1e-36 155.6 101 65.3
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 2.1e-36 155.6 96 65.6
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 2.1e-36 155.6 96 65.6
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 2.1e-36 155.6 96 65.6
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 2.8e-36 155.2 96 65.6
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 2.8e-36 155.2 96 66.7
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 2.8e-36 155.2 96 69.8
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 2.8e-36 155.2 96 68.8
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.6e-36 154.8 96 67.7
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 4.7e-36 154.5 99 63.6
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.7e-36 154.5 96 66.7
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.7e-36 154.5 96 66.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 4.7e-36 154.5 102 63.7
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.7e-36 154.5 96 66.7
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 6.1e-36 154.1 95 68.4
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 8.0e-36 153.7 95 65.3
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 8.0e-36 153.7 100 65.0
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 8.0e-36 153.7 96 67.7
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.0e-35 153.3 99 63.6
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.0e-35 153.3 96 67.7
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.0e-35 153.3 96 68.8
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.0e-35 153.3 96 66.7
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.4e-35 152.9 96 65.6
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.3e-35 152.1 96 67.7
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 3.0e-35 151.8 95 67.4
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 3.0e-35 151.8 96 66.7
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.2e-34 149.8 96 65.6
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 1.2e-34 149.8 96 65.6
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 1.5e-34 149.4 108 60.2
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.5e-34 149.4 102 68.6
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 2.6e-34 148.7 94 67.0
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 4.4e-34 147.9 93 64.5
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.7e-34 147.5 96 65.6
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.7e-34 147.5 96 65.6
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 9.8e-34 146.7 90 68.9
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 9.8e-34 146.7 97 61.9
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 1.7e-33 146.0 96 65.6
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.2e-33 145.6 96 63.5
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 4.9e-33 144.4 100 63.0
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 6.4e-33 144.1 96 63.5
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 8.3e-33 143.7 101 59.4
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 8.3e-33 143.7 97 63.9
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.8e-32 142.5 94 62.8
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 2.4e-32 142.1 91 64.8
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 3.2e-32 141.7 100 61.0
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 5.4e-32 141.0 96 60.4
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-31 139.4 95 58.9
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 2.0e-31 139.0 101 56.4
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 3.5e-31 138.3 98 58.2
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 4.6e-31 137.9 94 60.6
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.3e-30 136.3 98 58.2
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 2.3e-30 135.6 95 64.2
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 5.0e-30 134.4 102 56.9
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 8.6e-30 133.7 96 63.5
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 8.6e-30 133.7 96 63.5
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-29 132.9 96 63.5
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-29 132.9 96 63.5
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.5e-29 132.9 96 63.5
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 1.5e-29 132.9 96 63.5
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.5e-29 132.9 96 63.5
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.5e-29 132.9 96 63.5
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 2.5e-29 132.1 99 56.6
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 3.3e-29 131.7 88 63.6
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.2e-28 129.8 87 63.2
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.6e-28 129.4 94 57.4
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 2.1e-28 129.0 94 56.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 2.1e-28 129.0 101 55.4
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.7e-28 127.9 94 58.5
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 6.2e-28 127.5 96 56.2
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 8.0e-28 127.1 98 55.1
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.2e-27 124.4 84 63.1
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 6.8e-27 124.0 103 52.4
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.0e-26 122.5 85 58.8
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.0e-26 122.5 97 56.7
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 9.8e-26 120.2 104 48.1
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.4e-25 117.5 101 50.5
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 3.2e-24 115.2 98 46.9
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 5.4e-24 114.4 104 47.1
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 9.2e-24 113.6 97 51.5
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.2e-23 113.2 75 64.0
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.0e-23 112.5 100 49.0
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 4.6e-23 111.3 104 45.2
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 7.8e-23 110.5 102 49.0
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 1.0e-22 110.2 99 47.5
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.7e-22 109.4 87 57.5
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 2.3e-22 109.0 88 47.7
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.9e-22 108.2 72 63.9
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 3.9e-22 108.2 97 46.4
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 2.5e-21 105.5 97 46.4
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 7.3e-21 104.0 94 52.1
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.3e-19 99.0 98 44.9
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 1.2e-18 96.7 90 45.6
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 6.4e-17 90.9 49 79.6
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 8.6e-14 80.5 55 58.2
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 8.9e-11 70.5 96 41.7
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 4.9e-09 64.7 90 38.9
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 1.1e-08 63.5 41 65.9


User provided reference genes

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