Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 0.0e+00 1227.2 610 100.0
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 0.0e+00 1194.5 610 97.7
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 0.0e+00 1191.0 610 96.7
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 0.0e+00 1164.4 615 94.6
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1156.0 613 94.3
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 0.0e+00 1152.9 610 94.8
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 0.0e+00 1149.8 610 93.6
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1144.4 612 94.1
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1144.4 612 94.1
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1143.3 618 93.0
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1143.3 618 93.0
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1139.4 612 93.5
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1138.6 618 92.9
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1138.6 618 92.9
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1136.3 615 93.3
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1130.9 612 93.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1127.5 632 90.7
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 0.0e+00 1118.6 616 90.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.2e-312 1074.7 613 87.3
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.9e-311 1071.2 616 88.0
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.6e-301 1038.9 615 83.7
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 9.9e-296 1019.6 611 83.3
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.1e-294 1016.1 610 82.8
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 614 82.7
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 613 82.4
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 6.6e-292 1006.9 616 82.6
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.1e-291 1006.1 611 82.0
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 613 81.9
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.9e-291 1005.4 595 84.2
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 615 81.6
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 621 79.9
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 621 79.9
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 612 81.7
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 585 83.8
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 617 81.7
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.7e-290 1000.7 624 80.8
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.8e-289 998.8 622 81.0
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 2.4e-289 998.4 557 87.3
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.4e-289 998.4 612 81.2
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.4e-289 998.4 618 81.1
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 4.0e-289 997.7 621 82.0
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 4.0e-289 997.7 614 80.8
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 5.2e-289 997.3 591 82.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.9e-289 996.5 612 81.0
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 8.9e-289 996.5 615 81.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.2e-288 996.1 623 80.6
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-288 995.7 614 81.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.6e-288 995.0 590 82.7
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.4e-288 994.6 618 80.7
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.4e-288 994.6 614 80.6
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 4.4e-288 994.2 596 82.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 4.4e-288 994.2 614 80.3
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 7.6e-288 993.4 621 80.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.3e-287 992.6 626 80.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 2.2e-287 991.9 614 80.5
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 6.4e-287 990.3 610 80.3
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 8.4e-287 989.9 623 80.3
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 8.4e-287 989.9 610 80.2
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.1e-286 989.6 559 86.4
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.4e-286 989.2 615 79.8
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 2.4e-286 988.4 608 81.2
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.2e-286 988.0 575 83.3
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 4.2e-286 987.6 608 80.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.1e-286 986.9 614 80.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 1.6e-285 985.7 604 81.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.6e-285 985.7 651 78.0
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.1e-285 985.3 611 80.7
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.7e-285 984.9 615 80.7
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.7e-285 984.9 617 79.6
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 2.7e-285 984.9 610 80.5
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 4.6e-285 984.2 610 79.3
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 6.0e-285 983.8 582 84.0
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.0e-284 983.0 621 79.2
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.3e-284 982.6 613 80.3
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.7e-284 982.2 611 80.0
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.7e-284 982.2 611 80.0
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 5.1e-284 980.7 610 79.5
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 5.1e-284 980.7 611 80.7
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.1e-283 979.5 561 84.7
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.1e-283 979.5 561 84.7
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-283 978.8 561 84.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-283 978.8 612 79.1
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.3e-283 978.0 611 80.5
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 7.3e-283 976.9 572 83.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 7.3e-283 976.9 572 83.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 8.1e-282 973.4 599 81.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.8e-281 972.2 617 78.4
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 3.1e-281 971.5 572 82.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 6.9e-281 970.3 611 79.1
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 9.0e-281 969.9 634 77.3
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 9.0e-281 969.9 611 78.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.8e-280 967.2 621 78.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 9.9e-280 966.5 617 78.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.3e-279 966.1 605 78.8
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 6.4e-279 963.8 611 77.9
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 7.1e-278 960.3 600 80.0
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.0e-276 956.4 593 80.4
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.3e-276 955.3 601 79.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 6.6e-276 953.7 660 73.3
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 8.7e-276 953.4 563 82.2
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.9e-275 952.2 563 82.2
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.5e-275 951.8 563 82.1
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.8e-274 948.3 568 82.6
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.8e-273 945.7 645 74.1
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 3.1e-273 944.9 579 81.5
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.9e-270 935.6 587 80.6
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 7.1e-270 933.7 573 78.7
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.5e-267 925.2 575 78.1
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.3e-267 924.5 689 69.4
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 6.2e-266 920.6 525 85.0
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.4e-265 919.5 559 82.3
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.1e-265 918.3 570 78.4
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.9e-263 911.8 603 74.6
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 8.4e-263 910.2 589 75.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 3.5e-261 904.8 582 75.8
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 4.3e-259 897.9 597 76.7
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.3e-255 886.3 627 73.5
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.2e-254 881.7 558 76.9
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 8.7e-252 873.6 537 80.6
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 3.8e-247 858.2 622 72.3
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.1e-246 856.7 525 79.4
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.7e-242 841.6 624 69.1
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.8e-241 839.3 615 70.9
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 6.7e-236 820.8 607 66.4
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.2e-231 805.8 564 68.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.9e-223 778.9 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 4.7e-221 771.5 479 79.1
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.0e-219 766.1 490 78.4
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.2e-216 756.9 481 79.6
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.9e-215 752.3 549 66.3
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.4e-209 731.5 433 82.0
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.0e-209 731.1 426 83.6
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.5e-206 722.6 490 75.3
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 7.2e-206 721.1 433 80.4
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.2e-202 709.5 561 61.7
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.6e-199 698.0 429 79.7
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.3e-183 647.1 403 79.7
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.1e-177 627.5 433 74.8
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.3e-170 604.0 587 53.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.2e-155 554.3 312 87.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.9e-145 520.4 386 71.2
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.8e-124 450.7 340 70.9
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 3.3e-118 429.9 283 76.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 9.4e-105 385.2 277 67.1
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.4e-87 328.2 216 73.1
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 8.3e-77 292.4 209 74.2
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 3.9e-74 283.5 557 33.2
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.5e-73 281.6 151 88.7
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.0e-67 259.6 150 82.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 5.4e-60 236.5 131 86.3
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.1e-56 224.6 133 76.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.8e-55 221.5 126 84.9
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.7e-53 214.9 116 94.8
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.5e-49 201.8 114 83.3
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.9e-49 201.4 178 61.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.9e-49 201.4 115 82.6
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.6e-48 197.2 109 86.2
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.4e-47 195.3 169 62.1
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.0e-47 193.7 105 84.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.9e-45 186.8 115 77.4
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.7e-42 176.0 146 65.1
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.8e-39 168.3 107 81.3
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 9.9e-38 162.5 217 47.5
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.9e-36 158.3 153 59.5
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.0e-26 125.9 116 59.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.7e-25 120.2 61 91.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 6.9e-23 113.2 70 72.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 7.2e-20 103.2 56 87.5
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 7.9e-19 99.8 212 33.5
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.5e-17 94.7 73 67.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.1e-15 87.4 120 37.5
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 3.8e-13 80.9 67 56.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 3.2e-12 77.8 90 52.2


User provided reference genes

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