Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 3.3e-144 515.0 258 100.0
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 2.6e-136 488.8 258 94.6
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 1.3e-135 486.5 258 95.0
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 1.4e-129 466.5 259 90.0
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 3.0e-129 465.3 258 88.4
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 4.8e-127 458.0 258 87.2
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 1.2e-120 436.8 259 84.9
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 5.7e-120 434.5 258 84.5
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 5.4e-118 427.9 259 83.8
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 2.0e-117 426.0 259 83.4
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 2.0e-117 426.0 259 83.8
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 8.6e-116 420.6 269 81.0
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 2.0e-112 409.5 296 73.3
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 6.3e-111 404.4 252 81.3
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 3.5e-93 345.5 253 69.6
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 4.6e-93 345.1 236 72.9
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 6.0e-93 344.7 251 68.5
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 6.0e-93 344.7 244 72.1
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.0e-92 344.0 236 72.9
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.3e-92 342.8 250 70.4
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.9e-91 339.7 245 71.8
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 9.5e-91 337.4 244 70.1
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 1.2e-90 337.0 237 72.6
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 3.6e-90 335.5 235 72.3
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.1e-89 334.0 243 68.7
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 1.4e-89 333.6 245 70.2
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.8e-89 333.2 266 65.0
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 2.3e-89 332.8 230 73.5
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.2e-89 331.6 243 69.1
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 6.8e-89 331.3 245 69.0
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 2.0e-88 329.7 238 70.2
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 2.6e-88 329.3 250 69.2
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 2.6e-88 329.3 254 66.5
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 4.4e-88 328.6 244 68.9
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 4.4e-88 328.6 244 68.9
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 5.8e-88 328.2 244 69.3
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 7.6e-88 327.8 253 66.0
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 7.6e-88 327.8 239 70.3
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 9.9e-88 327.4 232 70.7
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 9.9e-88 327.4 246 69.1
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 9.9e-88 327.4 242 67.4
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.7e-87 326.6 245 68.2
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 2.2e-87 326.2 254 65.4
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 2.2e-87 326.2 244 68.4
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 2.9e-87 325.9 239 69.0
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 6.4e-87 324.7 235 68.5
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 8.4e-87 324.3 246 65.9
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 1.1e-86 323.9 227 72.2
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.4e-86 323.6 244 67.6
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.4e-86 323.6 237 69.6
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.9e-86 323.2 251 64.9
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 1.9e-86 323.2 245 65.7
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 2.4e-86 322.8 227 70.5
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 3.2e-86 322.4 230 69.1
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 4.1e-86 322.0 237 67.5
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 5.4e-86 321.6 253 65.6
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 7.1e-86 321.2 251 65.3
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 9.2e-86 320.9 231 70.1
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.2e-85 320.5 227 70.0
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 1.2e-85 320.5 233 68.7
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.6e-85 320.1 264 64.4
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 1.6e-85 320.1 244 66.8
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 2.1e-85 319.7 252 66.3
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 2.7e-85 319.3 229 68.6
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 2.7e-85 319.3 239 69.0
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 7.8e-85 317.8 231 69.7
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.8e-85 317.8 245 67.3
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.0e-84 317.4 232 68.5
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 1.3e-84 317.0 238 67.6
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.7e-84 316.6 238 68.1
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.7e-84 316.6 230 68.7
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 5.1e-84 315.1 247 65.6
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 6.6e-84 314.7 252 66.7
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 8.6e-84 314.3 238 66.8
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.5e-83 313.5 252 66.7
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.5e-83 313.5 249 64.3
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.5e-83 312.8 252 64.7
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 3.3e-83 312.4 236 66.9
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 3.3e-83 312.4 236 65.7
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 4.3e-83 312.0 256 60.9
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 4.3e-83 312.0 242 64.9
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 5.6e-83 311.6 245 66.1
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 7.3e-83 311.2 242 62.8
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 9.6e-83 310.8 236 67.4
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 9.6e-83 310.8 252 62.7
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 5.2e-81 305.1 235 65.5
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.2e-80 303.9 243 65.0
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.5e-80 303.5 241 62.7
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 3.4e-80 302.4 240 64.2
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 7.6e-80 301.2 240 67.1
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 2.2e-79 299.7 217 69.6
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.9e-79 299.3 235 64.7
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 2.9e-79 299.3 233 64.4
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.1e-78 297.4 235 63.8
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 4.6e-77 292.0 248 60.9
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 4.6e-77 292.0 203 69.5
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 2.5e-75 286.2 192 72.4
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 3.4e-72 275.8 244 61.1
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.2e-70 269.2 190 71.1
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 9.9e-64 247.7 157 74.5
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 9.3e-62 241.1 152 75.7
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 4.6e-61 238.8 253 51.4
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.3e-60 237.3 151 76.2
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.9e-60 235.7 140 78.6
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 5.1e-60 235.3 137 79.6
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 9.6e-59 231.1 184 61.4
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 9.6e-59 231.1 255 50.6
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.1e-57 227.6 184 64.1
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.1e-57 226.1 171 68.4
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 8.4e-55 218.0 189 58.7
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 8.7e-52 208.0 172 63.4
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 1.2e-48 197.6 175 60.0
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 3.1e-41 172.9 282 37.9
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 7.2e-30 135.2 103 64.1
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 1.4e-28 131.0 92 71.7
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.7e-26 124.0 78 71.8
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 1.8e-25 120.6 74 74.3
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 6.5e-23 112.1 186 43.5
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.6e-21 107.5 58 81.0
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 2.3e-20 103.6 82 63.4
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 1.1e-19 101.3 228 34.6
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 2.6e-19 100.1 91 54.9
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.3e-18 97.8 85 55.3
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 4.8e-18 95.9 59 76.3
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 2.0e-16 90.5 65 72.3
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 8.5e-15 85.1 148 33.8
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 1.6e-13 80.9 93 50.5
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 1.6e-13 80.9 93 50.5
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 1.6e-13 80.9 57 63.2
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 6.1e-13 79.0 196 32.1
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 6.1e-13 79.0 260 28.8
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.0e-12 78.2 58 58.6
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.2e-12 75.9 43 79.1
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.8e-11 71.6 145 39.3
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 2.2e-07 60.5 52 63.5
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 1.5e-06 57.8 54 53.7


User provided reference genes

Program Settings