Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.4e-121 438.0 221 100.0
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.6e-54 215.7 318 48.1
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.0e-53 214.2 310 48.4
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.2e-49 200.7 321 46.7
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 7.7e-49 198.0 319 46.7
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.0e-48 197.6 319 45.1
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 6.3e-43 178.3 315 42.9
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-42 177.6 315 42.9
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.6e-40 167.9 314 38.9
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-39 167.5 318 44.0
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.9e-39 166.8 314 39.2
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 5.6e-39 165.2 311 41.5
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 5.6e-39 165.2 317 40.1
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.6e-38 163.7 317 40.1
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 8.0e-38 161.4 320 38.8
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.4e-36 155.6 314 36.6
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.3e-35 154.1 314 37.3
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.9e-35 152.1 313 37.7
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 6.4e-35 151.8 309 39.5
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 3.2e-34 149.4 313 39.9
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 7.0e-34 148.3 313 39.6
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.5e-33 146.0 314 36.6
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 3.9e-32 142.5 244 43.0
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 8.6e-32 141.4 314 39.2
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.0e-30 134.8 313 36.4
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 8.0e-30 134.8 313 36.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.2e-28 131.0 311 35.7
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.6e-28 129.8 311 35.4
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.6e-28 129.8 313 35.5
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.6e-28 129.8 312 35.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.4e-28 129.4 313 35.8
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 7.5e-28 128.3 311 35.0
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.5e-28 128.3 312 35.6
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 2.2e-27 126.7 309 33.7
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.2e-27 126.7 312 35.3
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 6.4e-27 125.2 312 35.9
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 6.4e-27 125.2 312 34.9
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.3e-27 124.8 312 34.9
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 9.2e-26 121.3 304 33.9
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 9.2e-26 121.3 312 34.0
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-25 120.9 304 34.2
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 1.6e-25 120.6 318 35.5
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 5.0e-24 115.5 315 33.7
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 6.6e-24 115.2 308 31.8
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 8.6e-24 114.8 318 33.3
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 5.6e-23 112.1 318 34.9
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 5.6e-23 112.1 317 33.4
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.6e-22 110.5 310 33.2
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 4.7e-22 109.0 266 33.8
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-21 107.8 316 32.9
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.8e-21 107.1 307 33.9
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 6.8e-21 105.1 316 33.2
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 8.9e-21 104.8 316 32.3
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.0e-20 103.6 323 31.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 2.6e-20 103.2 303 33.0
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.6e-20 103.2 308 31.2
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 3.4e-20 102.8 315 31.1
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 4.4e-20 102.4 316 32.0
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.3e-19 100.9 327 30.9
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.7e-19 100.5 308 34.4
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.2e-19 100.1 310 31.0
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.9e-19 99.8 310 30.6
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.7e-19 99.4 305 32.5
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 3.7e-19 99.4 320 30.3
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 6.4e-19 98.6 286 32.5
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 6.4e-19 98.6 315 31.7
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.1e-18 97.8 326 31.9
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.4e-18 97.4 316 31.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.4e-18 97.4 295 31.5
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 2.4e-18 96.7 304 31.6
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.2e-18 96.3 306 30.1
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 3.2e-18 96.3 297 31.6
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.2e-18 96.3 322 31.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 3.2e-18 96.3 323 30.0
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 3.2e-18 96.3 315 30.8
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 4.1e-18 95.9 303 30.0
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.1e-18 95.9 306 30.1
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 4.1e-18 95.9 314 31.2
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 4.1e-18 95.9 311 32.5
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 7.1e-18 95.1 248 33.9
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 3.5e-17 92.8 235 32.3
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 3.5e-17 92.8 304 31.9
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 4.6e-17 92.4 324 30.9
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 6.0e-17 92.0 307 32.9
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 7.8e-17 91.7 306 31.4
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.0e-16 91.3 134 41.8
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.7e-16 90.5 234 33.3
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.7e-16 90.5 134 41.8
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.3e-16 90.1 312 31.7
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.3e-16 90.1 324 28.1
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.3e-16 90.1 317 28.1
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.0e-16 89.7 325 31.1
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.0e-16 89.7 327 31.2
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.6e-16 88.6 314 29.9
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 6.6e-16 88.6 319 31.0
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 6.6e-16 88.6 134 41.0
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.5e-15 87.4 304 29.3
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.9e-15 87.0 325 29.8
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.9e-15 87.0 312 29.2
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.9e-15 87.0 325 29.8
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.5e-15 86.7 302 31.1
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.5e-15 86.7 326 31.3
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 2.5e-15 86.7 298 31.5
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.5e-15 86.7 308 30.2
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 5.6e-15 85.5 323 28.2
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 9.5e-15 84.7 320 29.7
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 9.5e-15 84.7 134 41.0
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.5e-15 84.7 134 42.5
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 9.5e-15 84.7 134 39.6
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.6e-14 84.0 315 29.5
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 2.1e-14 83.6 273 29.3
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.1e-14 83.6 322 28.6
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.8e-14 83.2 299 27.8
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.8e-14 83.2 278 31.3
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 3.6e-14 82.8 300 30.0
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 3.6e-14 82.8 333 28.8
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 4.7e-14 82.4 301 29.6
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 4.7e-14 82.4 311 27.3
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 6.2e-14 82.0 134 38.1
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 6.2e-14 82.0 133 36.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 8.1e-14 81.6 298 28.9
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.1e-13 81.3 310 29.0
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.4e-13 80.9 301 29.2
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.4e-13 80.9 316 30.7
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.8e-13 80.5 133 37.6
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.3e-13 80.1 134 34.3
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 4.0e-13 79.3 324 26.5
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 4.0e-13 79.3 133 39.1
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 5.2e-13 79.0 133 36.1
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 5.2e-13 79.0 134 36.6
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 6.8e-13 78.6 134 37.3
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.2e-12 77.8 135 37.0
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.0e-12 77.0 313 28.8
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.6e-12 76.6 133 36.8
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 3.4e-12 76.3 318 26.4
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 3.4e-12 76.3 312 28.2
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.6e-12 75.1 131 33.6
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.7e-11 73.9 135 37.0
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.7e-11 73.9 253 29.2
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.2e-11 73.6 320 28.8
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.8e-11 72.8 320 28.1
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 4.9e-11 72.4 130 36.2
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 6.4e-11 72.0 329 24.9
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.4e-10 70.9 47 66.0
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.4e-10 70.9 244 29.9
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 2.4e-10 70.1 135 35.6
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 4.1e-10 69.3 305 26.9
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 5.4e-10 68.9 50 62.0
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.6e-09 67.4 247 28.3
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.7e-09 66.6 50 60.0
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 4.6e-09 65.9 85 41.2
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.3e-08 64.3 51 62.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 5.1e-08 62.4 133 32.3
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 8.6e-08 61.6 131 31.3
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.3e-07 59.7 84 44.0
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 6.2e-06 55.5 134 30.6


User provided reference genes

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