Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 8.0e-174 613.6 299 100.0
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.8e-118 429.1 250 84.8
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 7.1e-114 414.5 248 83.5
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 9.3e-98 360.9 248 73.0
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.3e-87 325.5 246 69.5
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 2.2e-83 313.2 244 69.3
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 8.5e-83 311.2 257 63.0
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.1e-82 310.8 257 63.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 2.5e-82 309.7 257 63.0
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.7e-78 297.0 171 86.5
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.6e-73 279.3 249 59.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 5.2e-72 275.4 232 61.2
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 8.8e-72 274.6 238 60.5
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.4e-71 272.3 225 61.3
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.1e-69 266.2 267 53.6
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 5.3e-69 265.4 276 52.5
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 7.0e-69 265.0 267 54.3
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.0e-67 261.2 267 53.9
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.0e-67 261.2 277 51.6
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 5.5e-66 255.4 249 55.0
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 7.2e-66 255.0 266 51.5
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 6.1e-65 251.9 279 49.1
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.2e-63 247.7 279 49.8
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.7e-63 245.4 257 48.6
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 7.5e-63 245.0 273 49.1
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 9.7e-63 244.6 280 49.3
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.7e-62 243.8 180 71.7
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.7e-62 243.8 279 48.7
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.8e-62 243.0 275 48.4
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 3.7e-62 242.7 278 47.8
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 6.3e-62 241.9 223 53.4
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 6.3e-62 241.9 278 47.5
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.4e-61 240.7 284 46.5
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.8e-61 240.4 278 48.6
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.8e-61 240.4 257 49.4
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 3.1e-61 239.6 285 46.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 5.3e-61 238.8 280 47.5
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 7.0e-61 238.4 186 62.4
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.6e-60 237.3 282 46.8
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.0e-60 236.9 267 47.2
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.7e-60 236.5 181 62.4
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 2.7e-60 236.5 279 47.0
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 4.5e-60 235.7 279 46.6
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 4.5e-60 235.7 280 46.1
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.9e-60 235.3 188 60.6
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 5.9e-60 235.3 280 46.4
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 7.7e-60 235.0 325 43.4
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 7.7e-60 235.0 232 51.7
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-59 234.2 283 46.6
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.3e-59 234.2 281 45.2
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 2.2e-59 233.4 281 47.0
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 3.8e-59 232.6 280 46.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 3.8e-59 232.6 287 45.3
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 6.5e-59 231.9 281 46.6
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 8.5e-59 231.5 282 46.5
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.5e-59 231.5 241 51.9
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.1e-58 231.1 279 44.4
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.5e-58 229.9 280 47.1
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.2e-58 229.6 277 44.0
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.2e-58 229.6 280 44.6
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 5.5e-58 228.8 262 48.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.5e-58 228.8 283 45.9
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.2e-57 227.6 281 45.9
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.2e-57 227.6 281 45.2
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.2e-57 227.6 284 44.7
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 1.2e-57 227.6 252 48.4
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.6e-57 227.3 287 45.3
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.6e-57 227.3 281 45.2
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.6e-57 227.3 278 45.0
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.6e-57 227.3 259 48.3
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.6e-57 227.3 278 46.0
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 3.6e-57 226.1 286 44.4
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 3.6e-57 226.1 281 46.6
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.0e-57 224.9 278 45.0
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.8e-56 223.8 184 60.9
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.3e-56 223.4 286 45.1
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 3.0e-56 223.0 287 44.3
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 3.0e-56 223.0 274 45.3
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 4.0e-56 222.6 286 45.1
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 6.8e-56 221.9 250 51.2
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 8.8e-56 221.5 218 52.3
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.2e-55 221.1 280 43.9
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-55 220.7 290 44.1
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.0e-55 220.3 275 44.4
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.6e-55 219.9 186 59.1
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.6e-55 219.9 281 43.4
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 5.7e-55 218.8 188 57.4
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 7.5e-55 218.4 252 45.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 3.7e-54 216.1 228 52.2
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.7e-54 216.1 264 42.4
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.7e-54 216.1 297 42.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 4.8e-54 215.7 305 40.7
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.8e-53 213.8 230 52.2
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.1e-53 213.0 280 42.9
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 7.0e-53 211.8 279 42.3
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 7.0e-53 211.8 259 45.2
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.6e-52 210.7 222 49.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.0e-52 210.3 278 42.8
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 2.7e-52 209.9 181 56.9
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 5.9e-52 208.8 296 39.9
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 5.0e-51 205.7 183 55.2
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-50 204.5 235 48.1
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.9e-50 203.8 181 55.2
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 3.3e-50 203.0 261 44.4
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.0e-48 198.0 144 67.4
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.0e-48 198.0 221 45.7
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.8e-48 197.2 187 52.4
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.8e-48 197.2 183 53.6
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.0e-48 196.4 230 49.1
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 5.2e-48 195.7 266 43.6
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.7e-46 190.7 272 42.3
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 1.3e-43 181.0 166 57.8
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.5e-42 176.8 226 47.8
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 6.1e-41 172.2 180 51.7
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 2.3e-40 170.2 147 59.9
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.4e-37 161.0 164 50.6
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 4.1e-37 159.5 164 50.6
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 7.0e-37 158.7 185 44.3
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.2e-37 158.3 263 37.6
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 7.8e-36 155.2 285 35.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.0e-35 153.3 165 49.1
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.5e-34 151.0 146 54.1
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.6e-34 149.1 214 43.5
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 5.6e-34 149.1 147 53.7
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 7.3e-34 148.7 164 48.2
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.6e-33 147.5 178 46.6
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.3e-32 143.7 168 45.2
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 4.1e-29 132.9 121 53.7
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 5.4e-29 132.5 137 51.1
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.2e-28 131.3 194 39.7
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 2.1e-28 130.6 89 70.8
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.1e-24 118.2 242 30.6
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 2.6e-23 113.6 129 49.6
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 7.1e-21 105.5 120 45.0
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.5e-20 103.2 113 49.6
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.5e-18 97.1 115 47.8
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 7.3e-18 95.5 226 31.0
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.8e-14 83.2 158 35.4
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.8e-14 83.2 158 35.4
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 1.1e-13 81.6 156 32.7
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 6.0e-12 75.9 63 49.2
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 7.8e-12 75.5 65 50.8
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.0e-11 75.1 61 62.3
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 6.6e-11 72.4 49 55.1
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 4.8e-09 66.2 169 30.2
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 4.8e-09 66.2 68 51.5
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.8e-09 66.2 68 51.5


User provided reference genes

Program Settings