Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25920 Arabidopsis lyrata HOM05D001472 ORTHO05D007811 1.5e-32 142.1 68 100.0
Carub.0003s1296 Capsella rubella HOM05D001472 ORTHO05D007811 2.0e-24 115.2 58 93.1
AL3G25400 Arabidopsis lyrata HOM05D001472 ORTHO05D007811 1.3e-23 112.5 58 91.4
AT3G13490 Arabidopsis thaliana HOM05D001472 ORTHO05D007811 1.7e-23 112.1 58 91.4
Thhalv10020319m.g Eutrema salsugineum HOM05D001472 ORTHO05D007811 1.7e-23 112.1 58 89.7
THA.LOC104810321 Tarenaya hassleriana HOM05D001472 ORTHO05D007811 6.5e-23 110.2 58 89.7
CARHR088160 Cardamine hirsuta HOM05D001472 ORTHO05D007811 1.1e-22 109.4 58 89.7
Sp3g11700 Schrenkiella parvula HOM05D001472 ORTHO05D007811 1.1e-22 109.4 58 87.9
Aa31LG8G690 Aethionema arabicum HOM05D001472 ORTHO05D007811 3.2e-22 107.8 58 84.5
BcaB04g18767 Brassica carinata HOM05D001472 ORTHO05D007811 5.5e-22 107.1 58 84.5
BcaC05g29175 Brassica carinata HOM05D001472 ORTHO05D007811 9.4e-22 106.3 58 86.2
A05p36040 Brassica napus HOM05D001472 ORTHO05D007811 9.4e-22 106.3 58 86.2
C05p54390 Brassica napus HOM05D001472 ORTHO05D007811 9.4e-22 106.3 58 86.2
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 9.4e-22 106.3 58 86.2
Ca_14801_v3 Cicer arietinum L. HOM05D001472 ORTHO05D007811 1.2e-21 105.9 58 84.5
Dinv13475 Davidia involucrata HOM05D001472 ORTHO05D007811 1.2e-21 105.9 58 84.5
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 1.6e-21 105.5 58 84.5
Medtr8g007295 Medicago truncatula HOM05D001472 ORTHO05D007811 3.6e-21 104.4 58 81.0
Psat0s3030g0040 Pisum sativum HOM05D001472 ORTHO05D007811 3.6e-21 104.4 58 81.0
CSS0028494 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D007811 6.1e-21 103.6 58 81.0
Lj2g0001026 Lotus japonicus HOM05D001472 ORTHO05D007811 6.1e-21 103.6 57 84.2
Aqoxy5G00018 Aquilegia oxysepala HOM05D001472 ORTHO05D007811 1.0e-20 102.8 58 79.3
TAR633G1259 Trochodendron aralioides HOM05D001472 ORTHO05D007811 1.0e-20 102.8 58 81.0
Manes.03G087300 Manihot esculenta HOM05D001472 ORTHO05D007811 1.4e-20 102.4 58 79.3
Phvul.011G015700 Phaseolus vulgaris HOM05D001472 ORTHO05D007811 1.4e-20 102.4 60 78.3
Rhsim05G0069400 Rhododendron simsii HOM05D001472 ORTHO05D007811 1.4e-20 102.4 58 79.3
Rhsim13G0233000 Rhododendron simsii HOM05D001472 ORTHO05D007811 1.4e-20 102.4 58 79.3
QL01p003604 Quercus lobata HOM05D001472 ORTHO05D007811 1.8e-20 102.1 58 81.0
Glyma.03G109000 Glycine max HOM05D001472 ORTHO05D007811 2.3e-20 101.7 56 82.1
Actinidia16242 Actinidia chinensis HOM05D001472 ORTHO05D007811 4.0e-20 100.9 58 77.6
CiPaw.13G177500 Carya illinoinensis HOM05D001472 ORTHO05D007811 4.0e-20 100.9 58 79.3
VMungo0331G0364 Vigna mungo HOM05D001472 ORTHO05D007811 4.0e-20 100.9 57 78.9
Gohir.A08G014800 Gossypium hirsutum HOM05D001472 ORTHO05D007811 5.2e-20 100.5 58 81.0
Gohir.D08G025400 Gossypium hirsutum HOM05D001472 ORTHO05D007811 5.2e-20 100.5 58 81.0
Sed0027407 Sechium edule HOM05D001472 ORTHO05D007811 5.2e-20 100.5 58 77.6
Phvul.010G046400 Phaseolus vulgaris HOM05D001472 ORTHO05D007811 6.8e-20 100.1 57 78.9
Sed0020866 Sechium edule HOM05D001472 ORTHO05D007811 6.8e-20 100.1 58 77.6
Hund16176 Selenicereus undatus HOM05D001472 ORTHO05D007811 6.8e-20 100.1 56 82.1
CsaV3_4G017540 Cucumis sativus L. HOM05D001472 ORTHO05D007811 8.8e-20 99.8 58 74.1
Thecc.04G056800 Theobroma cacao HOM05D001472 ORTHO05D007811 8.8e-20 99.8 58 81.0
arahy.Tifrunner.gnm1.ann1.NSES8Z Arachis hypogaea HOM05D001472 ORTHO05D007811 1.2e-19 99.4 58 77.6
arahy.Tifrunner.gnm1.ann1.WM6SSU Arachis hypogaea HOM05D001472 ORTHO05D007811 1.2e-19 99.4 58 77.6
Nn2g15862 Nelumbo nucifera HOM05D001472 ORTHO05D007811 1.2e-19 99.4 58 77.6
MELO3C014727.2 Cucumis melo HOM05D001472 ORTHO05D007811 1.5e-19 99.0 58 74.1
Oeu004752.1 Olea europaea HOM05D001472 ORTHO05D007811 1.5e-19 99.0 56 78.6
Potri.003G221600 Populus trichocarpa HOM05D001472 ORTHO05D007811 1.5e-19 99.0 60 75.0
Solyc01g005540.4 Solanum lycopersicum HOM05D001472 ORTHO05D007811 1.5e-19 99.0 58 79.3
Sopen01g001560 Solanum pennellii HOM05D001472 ORTHO05D007811 1.5e-19 99.0 58 79.3
PGSC0003DMG400032166 Solanum tuberosum HOM05D001472 ORTHO05D007811 1.5e-19 99.0 58 79.3
GSVIVG01025473001 Vitis vinifera HOM05D001472 ORTHO05D007811 1.5e-19 99.0 58 82.8
CANSAT11G2257 Cannabis sativa HOM05D001472 ORTHO05D007811 2.0e-19 98.6 58 77.6
Migut.N00550 Erythranthe guttata HOM05D001472 ORTHO05D007811 2.0e-19 98.6 58 77.6
Lj2C498G7 Lonicera japonica HOM05D001472 ORTHO05D007811 2.0e-19 98.6 58 75.9
Ciclev10014735m.g Citrus clementina HOM05D001472 ORTHO05D007811 3.4e-19 97.8 58 77.6
ECA233G2592 Erigeron canadensis HOM05D001472 ORTHO05D007811 3.4e-19 97.8 56 80.4
MD11G1003100 Malus domestica HOM05D001472 ORTHO05D007811 3.4e-19 97.8 58 79.3
PGR119G2138 Punica granatum HOM05D001472 ORTHO05D007811 3.4e-19 97.8 56 80.4
FvH4_3g45770 Fragaria vesca HOM05D001472 ORTHO05D007811 4.4e-19 97.4 58 77.6
Oeu059655.1 Olea europaea HOM05D001472 ORTHO05D007811 4.4e-19 97.4 58 77.6
Sc09g0000050 Simmondsia chinensis HOM05D001472 ORTHO05D007811 4.4e-19 97.4 58 77.6
Cpa.g.sc119.38 Carica papaya HOM05D001472 ORTHO05D007811 5.7e-19 97.1 58 79.3
DCAR_032192 Daucus carota HOM05D001472 ORTHO05D007811 5.7e-19 97.1 58 77.6
FAN25G0602 Fragaria x ananassa HOM05D001472 ORTHO05D007811 5.7e-19 97.1 58 77.6
RcHm_v2.0_Chr5g0083841 Rosa chinensis HOM05D001472 ORTHO05D007811 5.7e-19 97.1 58 77.6
Duzib168G2316 Durio zibethinus HOM05D001472 ORTHO05D007811 7.5e-19 96.7 58 75.9
FAN16G2109 Fragaria x ananassa HOM05D001472 ORTHO05D007811 7.5e-19 96.7 58 77.6
Lj6C105T5 Lonicera japonica HOM05D001472 ORTHO05D007811 7.5e-19 96.7 58 75.9
CAN.G1834.11 Capsicum annuum HOM05D001472 ORTHO05D007811 9.7e-19 96.3 58 75.9
FAN11G2456 Fragaria x ananassa HOM05D001472 ORTHO05D007811 9.7e-19 96.3 58 75.9
Lsat_1_v5_gn_6_52060 Lactuca sativa HOM05D001472 ORTHO05D007811 9.7e-19 96.3 58 75.9
Gorai.004G020700 Gossypium raimondii HOM05D001472 ORTHO05D007811 1.3e-18 95.9 59 79.7
Lalb_Chr13g0290681 Lupinus albus HOM05D001472 ORTHO05D007811 1.3e-18 95.9 56 75.0
Os02g0623500 Oryza sativa ssp. japonica HOM05D001472 ORTHO05D007811 1.3e-18 95.9 58 75.9
Zm00001eb063750 Zea mays HOM05D001472 ORTHO05D007811 1.3e-18 95.9 58 75.9
MD03G1003300 Malus domestica HOM05D001472 ORTHO05D007811 1.7e-18 95.5 56 78.6
Nitab4.5_0000551g0090 Nicotiana tabacum HOM05D001472 ORTHO05D007811 2.2e-18 95.1 58 74.1
Nitab4.5_0006195g0050 Nicotiana tabacum HOM05D001472 ORTHO05D007811 2.2e-18 95.1 58 74.1
CDE10G1063 Ceratophyllum demersum HOM05D001472 ORTHO05D007811 3.7e-18 94.4 58 72.4
MSTRG.12798 Avicennia marina HOM05D001472 ORTHO05D007811 4.8e-18 94.0 58 72.4
FAN21G3965 Fragaria x ananassa HOM05D001472 ORTHO05D007811 4.8e-18 94.0 58 75.9
HanXRQChr13g0405211 Helianthus annuus HOM05D001472 ORTHO05D007811 4.8e-18 94.0 58 75.9
Cc01_g00140 Coffea canephora HOM05D001472 ORTHO05D007811 6.3e-18 93.6 58 74.1
Atru.chr3.2103 Acer truncatum HOM05D001472 ORTHO05D007811 8.3e-18 93.2 58 75.9
Atru.chr3.2118 Acer truncatum HOM05D001472 ORTHO05D007811 8.3e-18 93.2 58 75.9
SGA_v2.0_scaffold6G03312 Striga asiatica HOM05D001472 ORTHO05D007811 1.8e-17 92.0 60 70.0
Eucgr.J01764 Eucalyptus grandis HOM05D001472 ORTHO05D007811 2.4e-17 91.7 60 73.3
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.4e-17 91.7 55 74.5
PSO541G5145 Papaver somniferum HOM05D001472 ORTHO05D007811 4.1e-17 90.9 58 70.7
Prupe.6G002900 Prunus persica HOM05D001472 ORTHO05D007811 9.1e-17 89.7 58 75.9
ATR1145G100 Amborella trichopoda HOM05D001472 ORTHO05D007811 3.5e-16 87.8 58 69.0
PSO675G5228 Papaver somniferum HOM05D001472 ORTHO05D007811 4.5e-16 87.4 58 69.0
AUR62040899 Chenopodium quinoa HOM05D001472 ORTHO05D007811 7.7e-16 86.7 56 71.4
AUR62042626 Chenopodium quinoa HOM05D001472 ORTHO05D007811 7.7e-16 86.7 56 71.4
HPP92_024267 Vanilla planifolia HOM05D001472 ORTHO05D007811 1.7e-15 85.5 58 67.2
EL10Ac4g10388 Beta vulgaris HOM05D001472 ORTHO05D007811 2.2e-15 85.1 56 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4006 Anthoceros agrestis HOM05D001472 ORTHO05D007811 3.6e-13 77.8 58 58.6
Mapoly0003s0001 Marchantia polymorpha HOM05D001472 ORTHO05D007811 3.6e-13 77.8 58 56.9
Pp3c19_5720 Physcomitrium patens HOM05D001472 ORTHO05D007811 4.0e-12 74.3 58 51.7
CBR_g46728 Chara braunii HOM05D001472 ORTHO05D007811 2.2e-10 68.6 58 51.7
FvH4_2g08732 Fragaria vesca HOM05D001472 ORTHO05D007811 1.1e-09 66.2 42 73.8
TPR.G32117 Trifolium pratense HOM05D001472 ORTHO05D007811 1.4e-09 65.9 38 76.3
SMO358G0196 Selaginella moellendorffii HOM05D001472 ORTHO05D007811 4.1e-09 64.3 58 48.3
FAN24G3222 Fragaria x ananassa HOM05D000189 ORTHO05D014474 2.9e-07 58.2 46 56.5
PRCOL_00005729 Prasinoderma coloniale HOM05D001472 ORTHO05D007811 5.0e-07 57.4 56 46.4
FvH4_6g23270 Fragaria vesca HOM05D001472 ORTHO05D007811 1.5e-06 55.8 35 71.4


User provided reference genes

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