Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 4.7e-140 501.1 244 100.0
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.1e-136 490.0 244 98.0
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.0e-134 483.4 244 95.5
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.5e-130 469.5 244 92.6
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 8.3e-129 463.8 244 91.0
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.1e-128 463.4 244 91.4
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 3.2e-128 461.8 244 89.8
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 3.9e-126 454.9 245 89.0
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.5e-125 453.0 245 88.6
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 4.3e-125 451.4 244 90.2
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 5.6e-125 451.1 244 87.3
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.2e-124 449.9 245 87.3
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 3.6e-124 448.4 245 87.8
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 4.9e-121 438.0 244 85.2
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 9.3e-112 407.1 244 78.7
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.7e-110 402.9 244 78.3
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 6.6e-110 401.0 241 78.0
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.9e-109 399.4 241 77.2
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 76.2
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 4.3e-109 398.3 241 76.8
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 5.6e-109 397.9 241 76.3
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 7.3e-109 397.5 241 76.3
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 7.3e-109 397.5 244 76.6
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 9.6e-109 397.1 241 75.1
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 9.6e-109 397.1 239 77.0
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.8e-108 395.6 241 76.8
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 4.8e-108 394.8 246 76.4
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.8e-108 394.8 241 76.8
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 6.2e-108 394.4 241 76.3
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 2.4e-107 392.5 241 76.8
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 3.1e-107 392.1 244 74.2
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 9.0e-107 390.6 241 76.8
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 9.0e-107 390.6 242 74.4
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 73.4
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 4.5e-106 388.3 244 74.2
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 73.8
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 1.3e-105 386.7 244 73.4
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 1.7e-105 386.3 241 73.9
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.7e-105 386.3 244 73.0
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 1.7e-105 386.3 241 74.7
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 2.2e-105 386.0 246 75.2
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.2e-105 386.0 244 74.2
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.2e-105 386.0 241 74.7
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 2.9e-105 385.6 242 75.2
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 2.9e-105 385.6 244 73.0
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 2.9e-105 385.6 246 74.4
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 2.9e-105 385.6 244 73.4
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 3.8e-105 385.2 244 73.4
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.8e-105 385.2 244 73.4
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.9e-105 384.8 242 74.4
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 8.4e-105 384.0 244 72.5
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 8.4e-105 384.0 242 73.6
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 1.4e-104 383.3 241 74.7
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.9e-104 382.9 244 73.8
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 1.9e-104 382.9 244 73.0
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.4e-104 382.5 244 72.5
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 4.2e-104 381.7 244 72.5
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 5.4e-104 381.3 239 74.1
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 7.1e-104 380.9 238 73.9
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 7.1e-104 380.9 260 70.0
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 9.3e-104 380.6 244 71.7
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.2e-103 380.2 244 70.9
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 2.1e-103 379.4 245 72.7
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 3.5e-103 378.6 241 75.1
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.3e-102 376.7 242 71.1
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 5.1e-102 374.8 242 70.7
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 8.7e-102 374.0 241 73.0
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 1.9e-101 372.9 241 71.8
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 1.9e-101 372.9 272 66.2
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 3.3e-101 372.1 282 65.2
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 9.6e-101 370.5 242 69.8
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.6e-100 369.8 293 62.5
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 2.1e-100 369.4 241 73.0
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 3.7e-100 368.6 273 67.4
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 4.8e-100 368.2 230 74.3
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 4.8e-100 368.2 226 75.7
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 8.1e-100 367.5 254 70.5
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.4e-99 366.7 229 76.0
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 6.9e-99 364.4 239 71.1
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 9.0e-99 364.0 241 70.1
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.3e-97 360.1 241 69.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 2.2e-97 359.4 242 70.7
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 6.4e-97 357.8 239 69.0
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 2.4e-96 355.9 228 72.4
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 3.2e-96 355.5 241 68.9
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 6.0e-95 351.3 241 68.0
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 1.8e-94 349.7 241 68.5
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.6e-92 343.2 207 75.8
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 3.1e-91 339.0 244 66.8
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 4.5e-90 335.1 325 54.5
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.4e-88 330.1 210 72.4
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 4.2e-88 328.6 244 64.3
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.1e-86 321.6 202 73.8
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 2.8e-84 315.8 203 72.4
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 3.7e-84 315.5 281 54.4
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.2e-82 310.5 205 69.3
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 7.6e-82 307.8 256 55.9
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.2e-80 302.0 241 60.6
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.2e-80 301.2 298 51.7
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.1e-79 298.1 241 59.3
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 7.4e-77 291.2 218 66.5
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 9.7e-77 290.8 250 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 4.4e-69 265.4 316 43.7
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 7.2e-64 248.1 257 48.6
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.8e-60 236.1 249 47.4
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.7e-57 226.9 250 48.0
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.0e-53 213.4 239 45.2
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 2.6e-53 213.0 256 43.0
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 1.1e-51 207.6 341 40.2
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 1.0e-49 201.1 120 82.5
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.5e-48 197.2 131 72.5
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.5e-48 196.4 120 75.0
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 3.4e-45 186.0 108 75.0
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.6e-34 150.6 94 74.5
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.5e-34 149.1 81 75.3
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 1.8e-22 110.5 166 45.2
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.8e-21 105.5 83 57.8
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.8e-21 105.5 83 57.8
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 5.8e-21 105.5 57 75.4
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 6.0e-18 95.5 51 86.3
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.3e-17 93.6 75 57.3
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 3.0e-17 93.2 51 84.3
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 3.0e-17 93.2 51 84.3
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 3.3e-16 89.7 69 65.2
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 4.0e-14 82.8 60 61.7
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.5e-13 80.9 43 83.7
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.1e-11 74.7 38 86.8
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 3.5e-10 69.7 38 81.6
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 3.9e-09 66.2 101 37.6
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 6.2e-07 58.9 77 39.0
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 1.1e-06 58.2 70 40.0
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 3.1e-06 56.6 73 42.5


User provided reference genes

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