Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 0.0e+00 1302.7 680 100.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.5e-284 982.6 685 79.6
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 6.9e-274 947.2 704 75.7
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.0e-272 943.3 706 74.8
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.7e-249 865.5 690 71.4
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.7e-249 865.5 690 72.5
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.7e-240 836.3 690 69.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 5.5e-239 831.2 686 69.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 4.4e-236 821.6 687 68.6
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.3e-235 820.1 688 70.3
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 2.4e-234 815.8 692 67.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.7e-232 809.7 690 68.7
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.3e-232 809.3 692 67.6
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 5.0e-232 808.1 688 67.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 3.0e-229 798.9 691 66.6
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 8.9e-229 797.3 688 66.7
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.6e-228 795.8 688 68.8
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-226 790.4 692 66.5
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 7.0e-226 787.7 691 67.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-225 786.9 692 66.6
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.9e-191 673.3 560 69.1
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 6.0e-185 651.7 698 56.7
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 8.2e-166 588.2 707 50.5
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 3.9e-160 569.3 708 52.4
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 7.4e-159 565.1 707 51.5
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.1e-157 561.2 708 51.6
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 4.1e-157 559.3 706 51.0
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.8e-150 536.6 708 49.6
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.1e-149 533.1 771 42.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.1e-149 531.6 761 47.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.8e-147 526.2 709 49.9
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.8e-147 526.2 709 49.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.0e-147 525.8 709 49.4
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.4e-146 524.2 700 47.9
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.4e-146 524.2 697 47.2
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.5e-146 523.5 709 49.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 7.2e-146 521.9 709 49.8
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.2e-145 521.2 711 45.0
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.6e-145 519.6 709 49.2
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 6.1e-145 518.8 710 47.6
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 8.8e-144 515.0 709 48.9
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.5e-143 514.2 710 48.5
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 4.4e-143 512.7 705 49.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.7e-142 510.8 706 46.3
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.2e-142 510.4 730 47.7
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.8e-141 507.3 697 46.5
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 9.1e-141 505.0 707 47.8
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.6e-140 503.4 708 48.3
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 6.5e-139 498.8 711 43.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.2e-138 496.5 713 45.4
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-137 494.2 715 45.2
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.8e-136 490.7 717 44.6
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 4.0e-136 489.6 710 47.7
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 6.7e-136 488.8 710 45.6
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.2e-135 488.0 710 46.3
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.5e-135 487.6 717 46.3
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 4.4e-135 486.1 704 44.9
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 5.7e-135 485.7 719 47.0
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 7.5e-135 485.3 715 45.6
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 7.5e-135 485.3 713 45.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.7e-134 484.2 714 46.8
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.2e-134 483.8 705 46.1
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.2e-132 478.0 714 44.5
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.2e-132 478.0 706 46.7
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 3.8e-131 473.0 705 46.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.5e-130 469.2 710 45.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 5.5e-130 469.2 708 43.8
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 4.7e-129 466.1 709 46.7
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 6.1e-129 465.7 709 46.8
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.3e-128 463.8 712 44.8
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.3e-128 463.8 697 45.1
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.0e-128 463.4 706 44.6
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 8.8e-128 461.8 707 45.5
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.2e-127 461.5 703 45.2
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 5.7e-127 459.1 703 45.1
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 9.8e-127 458.4 705 43.1
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 3.5e-124 449.9 672 45.1
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.3e-123 448.0 746 42.8
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.9e-123 446.8 711 45.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 6.6e-123 445.7 702 44.6
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.9e-122 444.1 700 43.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.2e-122 443.0 708 44.1
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 7.2e-122 442.2 708 42.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.8e-121 440.3 704 43.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 4.7e-121 439.5 709 42.2
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 6.1e-121 439.1 735 43.1
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 8.0e-121 438.7 707 43.7
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 6.8e-120 435.6 736 41.8
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 9.8e-119 431.8 635 47.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.7e-118 431.0 710 41.8
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 2.8e-118 430.3 635 46.5
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 3.7e-118 429.9 711 43.9
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.4e-117 427.2 701 41.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.2e-116 424.9 714 43.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.3e-115 421.4 642 45.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.3e-115 420.6 708 43.2
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 8.6e-115 418.7 709 41.6
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.3e-114 416.8 698 38.1
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.0e-112 411.8 714 42.3
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 8.9e-112 408.7 712 40.3
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 9.8e-111 405.2 708 38.6
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.5e-106 390.6 707 39.9
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 4.3e-106 389.8 717 40.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.2e-105 388.3 539 43.6
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.2e-105 388.3 638 45.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 6.2e-105 386.0 706 41.8
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.4e-104 384.8 708 37.0
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 5.2e-104 382.9 474 54.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.9e-102 377.1 709 41.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.7e-100 370.5 711 36.4
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 4.7e-97 359.8 522 47.7
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.3e-90 337.0 695 35.5
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-83 315.5 529 39.5
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-83 313.9 515 44.3
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.9e-82 311.2 533 45.6
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.8e-81 307.4 463 46.2
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 6.9e-80 302.8 630 38.9
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.3e-70 271.9 524 35.1
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.2e-70 271.2 530 35.8
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-63 248.1 480 36.2
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-62 244.2 465 37.4
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.1e-60 238.0 271 59.4
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 4.6e-60 236.9 717 34.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 7.9e-60 236.1 354 42.1
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.0e-59 234.2 420 40.7
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.2e-55 222.2 432 35.9
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 9.7e-50 202.6 257 56.8
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 2.2e-49 201.4 705 28.1
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.9e-48 196.4 319 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 7.9e-44 183.0 559 28.3
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.4e-43 182.2 135 72.6
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 4.3e-42 177.2 164 59.8
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 8.2e-41 172.9 656 27.6
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 2.6e-39 167.9 125 70.4
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 3.4e-39 167.5 197 49.2
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.6e-36 158.7 194 63.9
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.2e-33 148.3 541 27.5
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 2.9e-30 137.9 551 26.0
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.9e-30 137.9 123 53.7
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.0e-27 129.4 162 48.1
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-26 125.6 125 55.2
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.6e-23 114.8 187 36.9
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.5e-23 114.4 141 44.7
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.3e-22 112.5 197 35.5
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 4.2e-21 107.5 289 30.4
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.2e-20 105.9 124 44.4
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.4e-19 102.4 111 52.3
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 3.4e-18 97.8 76 63.2
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 7.5e-18 96.7 136 40.4
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.4e-16 91.7 259 29.7
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.3e-16 90.5 86 50.0
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.1e-16 89.7 98 53.1
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 4.5e-15 87.4 125 44.0
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.3e-14 85.9 242 30.6
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.7e-14 85.5 71 64.8
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-13 82.8 98 50.0
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.2e-13 80.9 94 42.6
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.2e-13 80.9 94 42.6
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 5.5e-13 80.5 152 36.2
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.0e-11 76.3 125 38.4
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-11 73.9 104 38.5
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-11 73.9 104 43.3
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-11 73.9 104 43.3
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 5.2e-11 73.9 126 39.7
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-10 72.8 101 43.6
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-10 69.7 104 42.3
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.3e-09 69.3 277 31.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-09 66.6 104 41.3
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-09 66.6 104 40.4
Cfa025520 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.8e-08 65.5 204 23.5
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.4e-08 63.9 65 56.9
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-07 62.0 65 55.4
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-07 62.0 65 55.4
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-07 62.0 65 55.4
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-07 62.0 65 55.4
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.9e-07 60.5 65 53.8
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.3e-06 59.3 80 40.0
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-06 58.9 104 37.5
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 1.7e-06 58.9 203 35.0
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 8.6e-06 56.6 72 40.3


User provided reference genes

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