Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 2.5e-179 632.1 338 100.0
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 7.9e-170 600.5 338 95.0
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 2.5e-163 578.9 337 92.9
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 5.7e-160 567.8 338 89.1
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 7.7e-157 557.4 340 87.6
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 3.6e-154 548.5 340 85.9
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 1.0e-153 547.0 340 86.2
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 1.3e-151 540.0 340 85.0
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 1.4e-150 536.6 338 86.7
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 7.7e-149 530.8 340 83.8
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 4.4e-144 515.0 341 80.9
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 4.3e-115 418.7 345 65.5
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 1.1e-107 394.0 349 61.0
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 2.8e-106 389.4 345 61.2
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 6.4e-103 378.3 294 66.3
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.4e-102 377.1 349 59.9
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 7.1e-102 374.8 326 63.2
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 4.6e-101 372.1 360 59.4
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 7.8e-101 371.3 355 59.7
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 7.8e-101 371.3 347 57.3
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 1.7e-100 370.2 349 59.9
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 3.0e-100 369.4 345 59.4
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 8.6e-100 367.9 338 62.1
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 8.6e-100 367.9 339 59.3
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 1.1e-99 367.5 349 59.0
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 1.5e-99 367.1 342 58.2
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 4.3e-99 365.5 343 58.0
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 2.1e-98 363.2 340 58.5
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 4.7e-98 362.1 338 57.7
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.4e-97 360.5 336 56.8
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 2.3e-97 359.8 339 57.5
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 3.1e-97 359.4 301 63.5
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 4.0e-97 359.0 349 58.7
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.2e-96 357.5 346 58.1
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 9.9e-96 354.4 339 58.4
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.2e-95 353.2 341 56.9
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 2.2e-95 353.2 349 57.3
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.9e-95 352.8 341 57.5
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 2.9e-95 352.8 347 56.5
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 3.8e-95 352.4 341 56.9
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 8.4e-95 351.3 343 56.0
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 1.4e-94 350.5 347 58.2
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 4.1e-94 349.0 343 55.7
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 7.1e-94 348.2 338 56.2
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 7.1e-94 348.2 338 56.2
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.6e-93 347.1 323 57.9
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 3.5e-93 345.9 325 57.8
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 3.5e-93 345.9 341 55.4
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.0e-92 344.4 342 56.4
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.0e-92 344.4 335 54.3
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 5.1e-92 342.0 339 56.6
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.1e-91 340.9 346 57.5
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 7.3e-91 338.2 343 55.4
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 9.6e-91 337.8 323 57.0
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.2e-90 337.4 324 55.2
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 2.8e-90 336.3 345 54.5
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 3.6e-90 335.9 328 59.1
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 4.7e-90 335.5 350 54.3
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 6.9e-89 331.6 342 54.1
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.4e-88 329.3 347 55.9
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 5.8e-88 328.6 294 58.2
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 7.6e-88 328.2 350 53.7
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 1.3e-87 327.4 343 54.5
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 2.9e-87 326.2 341 52.8
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 3.2e-86 322.8 321 54.2
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 5.4e-86 322.0 356 51.1
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 2.7e-85 319.7 311 57.6
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 3.5e-85 319.3 331 51.1
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 7.8e-85 318.2 293 57.3
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 7.8e-85 318.2 390 47.9
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 6.6e-84 315.1 318 55.3
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 6.6e-84 315.1 320 54.7
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 1.9e-83 313.5 299 58.5
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 3.3e-83 312.8 390 48.7
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 3.3e-83 312.8 343 51.6
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 4.3e-83 312.4 331 51.1
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 4.8e-82 308.9 297 57.2
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 4.0e-81 305.8 342 50.6
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 1.2e-80 304.3 337 51.6
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 2.9e-79 299.7 325 55.1
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 7.9e-77 291.6 342 46.8
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 6.7e-76 288.5 348 49.1
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 9.6e-75 284.6 341 48.7
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 2.1e-74 283.5 328 50.3
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 2.1e-74 283.5 294 50.0
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 6.7e-68 261.9 289 47.1
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 3.8e-63 246.1 337 44.2
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 9.7e-59 231.5 311 43.7
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.8e-58 229.9 341 45.5
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 2.1e-53 213.8 282 47.2
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 6.1e-53 212.2 249 45.0
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 1.5e-51 207.6 205 54.1
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 5.7e-51 205.7 297 41.4
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 4.8e-50 202.6 221 50.2
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 2.6e-35 153.7 118 69.5
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.2e-34 150.6 136 61.0
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 3.5e-32 143.3 95 69.5
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 9.4e-30 135.2 301 29.9
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 6.1e-29 132.5 240 37.5
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 1.0e-23 115.2 111 55.0
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.2e-23 114.0 133 56.4
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 2.9e-23 113.6 170 47.1
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 2.9e-23 113.6 301 28.2
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-18 97.4 344 25.3
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 1.7e-10 71.2 136 36.8
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.1e-09 68.6 51 62.7


User provided reference genes

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