Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 8.8e-190 666.8 330 100.0
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.7e-183 644.4 330 96.4
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.6e-173 612.1 330 92.1
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.9e-168 595.9 326 90.2
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 6.6e-161 570.9 326 86.5
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.9e-160 569.3 326 85.0
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 3.6e-159 565.1 326 84.4
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 6.8e-158 560.8 329 86.0
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-157 560.1 321 86.3
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 5.7e-157 557.8 321 86.6
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 9.8e-157 557.0 326 84.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 2.8e-156 555.4 326 83.4
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.9e-153 545.4 326 82.2
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.9e-152 542.7 326 80.1
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.9e-152 542.7 327 82.3
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 5.0e-145 518.1 300 86.0
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.9e-144 516.2 298 86.6
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 2.5e-136 489.2 327 76.1
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 4.4e-133 478.4 328 71.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 3.3e-112 409.1 325 57.5
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.3e-111 407.1 297 62.3
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.3e-111 407.1 297 62.3
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.8e-111 406.0 297 61.6
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.8e-109 398.3 324 57.7
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 7.6e-109 397.9 309 60.5
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.3e-108 397.1 321 57.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.7e-108 396.7 327 56.3
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.2e-108 396.4 294 61.9
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.9e-108 396.0 291 61.2
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.9e-108 395.2 300 60.7
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.9e-107 393.3 292 59.6
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 4.2e-107 392.1 296 61.1
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.1e-106 389.8 328 56.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 3.5e-106 389.0 324 57.1
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 7.9e-106 387.9 328 56.1
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 7.9e-106 387.9 284 62.7
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.0e-105 387.5 301 60.1
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.3e-105 386.3 318 57.5
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 3.0e-105 386.0 323 57.6
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 3.9e-105 385.6 330 55.5
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.9e-105 385.6 301 59.8
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 5.1e-105 385.2 284 62.7
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 8.7e-105 384.4 326 54.9
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.1e-104 384.0 305 59.3
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.3e-103 380.6 328 57.0
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.8e-103 379.4 284 61.3
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 4.8e-103 378.6 305 58.0
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 8.1e-103 377.9 341 55.1
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.8e-102 376.7 292 61.0
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 2.4e-102 376.3 337 54.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 1.3e-100 370.5 284 60.6
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.9e-100 369.4 306 58.5
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 3.8e-100 369.0 306 58.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 3.2e-99 365.9 291 58.1
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 7.1e-99 364.8 307 56.0
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.6e-98 363.6 250 66.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.6e-98 363.6 312 57.1
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 6.0e-98 361.7 250 63.6
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 3.0e-97 359.4 296 56.8
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 6.7e-97 358.2 318 55.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.1e-96 357.5 351 49.6
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 4.3e-96 355.5 284 57.4
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.7e-96 355.1 256 62.9
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 5.7e-96 355.1 281 59.4
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 5.7e-96 355.1 281 59.4
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 7.4e-96 354.8 315 53.0
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.6e-95 353.6 285 58.2
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.6e-95 353.6 325 54.2
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.8e-95 352.8 294 56.8
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.8e-95 352.8 310 56.1
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.7e-95 352.4 282 58.5
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 4.8e-95 352.1 283 57.6
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.2e-95 351.7 313 56.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 2.4e-94 349.7 293 56.0
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 3.1e-94 349.4 256 62.9
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.1e-94 349.4 282 58.5
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 6.9e-94 348.2 285 57.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 7.6e-93 344.7 248 62.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.7e-92 343.6 246 62.6
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.5e-92 341.7 296 54.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.2e-91 339.3 250 61.6
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 5.1e-89 332.0 257 59.1
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.5e-88 330.5 250 60.8
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 3.3e-88 329.3 228 64.9
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.3e-87 327.4 284 54.9
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.1e-82 310.1 283 51.9
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 3.0e-81 306.2 339 47.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.1e-81 305.4 301 51.5
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.7e-81 305.1 301 51.5
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.4e-78 296.6 329 47.1
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.9e-77 292.0 326 48.5
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.0e-73 281.2 236 55.9
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.2e-71 273.5 283 48.1
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.2e-71 273.5 225 57.3
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 4.8e-71 272.3 278 47.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 8.2e-71 271.6 195 61.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.1e-70 271.2 278 45.7
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.8e-70 270.4 188 62.8
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 2.0e-69 266.9 279 44.8
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.7e-69 265.0 189 61.4
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.9e-67 260.4 184 61.4
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.2e-66 257.7 246 49.2
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.6e-66 257.3 282 47.9
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 7.0e-62 241.9 157 64.3
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 9.1e-62 241.5 323 43.3
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 9.4e-59 231.5 154 63.6
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.0e-57 228.0 153 65.4
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-50 204.1 175 54.9
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.2e-49 199.1 247 46.6
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 6.8e-49 198.7 148 60.1
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.7e-48 195.7 240 45.4
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.8e-48 194.9 240 45.8
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 6.8e-41 172.2 166 48.8
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.9e-39 166.8 217 36.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.7e-37 160.2 151 53.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 4.6e-37 159.5 114 61.4
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.3e-35 152.9 189 46.0
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.2e-34 149.1 200 42.5
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.4e-33 147.9 232 39.7
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.0e-32 144.1 76 92.1
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 4.4e-32 142.9 123 49.6
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.9e-28 129.8 127 54.3
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 8.6e-28 128.6 119 52.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.5e-27 127.9 129 53.5
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.9e-27 127.5 74 71.6
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.8e-25 120.9 287 29.6
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.0e-25 119.8 102 53.9
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 7.5e-24 115.5 100 53.0
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.4e-16 89.7 119 49.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.1e-14 85.1 163 35.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.1e-14 85.1 67 61.2
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.1e-11 75.1 114 43.0
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.2e-10 71.6 110 41.8
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.2e-10 71.6 79 46.8


User provided reference genes

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