Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 0.0e+00 1391.3 697 100.0
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 0.0e+00 1294.3 697 92.8
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 0.0e+00 1172.1 702 84.3
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 0.0e+00 1168.3 702 84.5
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 0.0e+00 1162.9 701 83.7
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 0.0e+00 1090.9 714 77.7
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 0.0e+00 1080.1 709 77.9
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 4.9e-307 1057.4 679 78.5
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 7.0e-306 1053.5 679 79.1
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 4.6e-305 1050.8 698 77.5
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 2.8e-302 1041.6 704 76.6
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 2.5e-263 912.1 710 65.1
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 4.8e-254 881.3 509 85.5
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 1.7e-227 793.1 699 55.9
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 3.8e-227 792.0 707 55.4
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.8e-224 783.1 709 56.6
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.2e-222 776.2 702 54.8
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.4e-221 772.7 709 56.0
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 3.8e-219 765.4 712 53.8
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 3.6e-217 758.8 717 54.1
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.3e-216 756.1 708 53.4
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.5e-215 753.4 705 55.2
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 7.5e-215 751.1 710 53.5
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 4.1e-213 745.3 711 54.0
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 7.7e-212 741.1 733 52.8
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.3e-211 740.3 697 52.2
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 3.8e-211 738.8 711 53.0
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 8.5e-211 737.6 708 52.5
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.9e-210 736.5 733 52.5
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 9.5e-210 734.2 393 96.2
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.8e-208 729.9 697 51.4
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 7.5e-207 724.5 699 51.9
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.4e-205 720.3 709 51.9
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 5.4e-205 718.4 711 49.8
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 1.2e-204 717.2 709 51.5
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 3.3e-202 709.1 761 50.1
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 1.2e-201 707.2 696 50.4
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 8.0e-201 704.5 702 49.7
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 8.9e-200 701.0 701 51.4
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 1.2e-199 700.7 707 49.9
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 7.5e-199 698.0 708 49.4
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 9.2e-197 691.0 711 49.8
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 2.0e-196 689.9 712 50.1
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 3.5e-196 689.1 700 50.4
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 7.8e-196 688.0 713 49.2
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.3e-195 687.2 700 50.4
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 1.7e-195 686.8 721 49.2
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 1.8e-192 676.8 698 48.7
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 4.0e-192 675.6 702 49.7
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 5.2e-192 675.2 705 49.9
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 2.6e-191 672.9 699 49.2
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 4.4e-191 672.2 703 49.1
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-190 670.6 709 47.5
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 2.9e-190 669.5 706 46.9
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 7.0e-189 664.8 703 46.9
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.7e-188 662.9 640 51.6
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 6.6e-187 658.3 676 51.5
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 2.5e-186 656.4 708 48.2
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.3e-186 655.6 690 50.1
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 5.8e-183 645.2 610 52.6
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 6.4e-182 641.7 699 49.5
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.9e-181 640.2 701 47.1
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.4e-181 639.8 697 49.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 7.1e-181 638.3 701 49.1
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.2e-180 637.5 695 49.2
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 6.0e-180 635.2 698 48.3
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 3.4e-175 619.4 593 55.6
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.4e-173 614.0 702 48.0
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 5.4e-173 612.1 695 46.9
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 4.7e-169 599.0 505 56.2
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 8.1e-169 598.2 694 46.3
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 1.4e-168 597.4 705 45.0
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 4.6e-164 582.4 706 44.1
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.0e-163 579.7 738 44.6
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 6.6e-163 578.6 513 53.2
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.5e-159 567.4 708 44.1
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.4e-157 560.8 604 47.5
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 3.7e-153 546.2 470 57.4
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.6e-151 540.0 537 53.6
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.4e-149 534.3 448 60.0
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 5.5e-149 532.3 458 55.2
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 2.6e-135 486.9 399 58.9
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 5.0e-134 482.6 604 45.2
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 3.7e-129 466.5 559 43.8
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 6.9e-128 462.2 469 51.8
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.0e-126 458.4 442 52.5
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 4.2e-125 453.0 610 41.1
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 8.8e-123 445.3 642 41.4
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.4e-119 433.3 443 53.0
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 8.5e-118 428.7 529 44.0
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 1.6e-116 424.5 493 48.7
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 6.7e-115 419.1 544 42.1
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 4.7e-108 396.4 509 41.7
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 4.8e-105 386.3 840 31.0
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 3.2e-101 373.6 665 35.0
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 3.0e-91 340.5 774 30.1
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.3e-86 325.1 826 29.4
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 7.3e-85 319.3 703 31.0
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 7.3e-85 319.3 703 31.0
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.8e-83 312.8 698 32.5
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.9e-77 294.7 230 61.3
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.5e-74 285.0 592 31.9
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 5.8e-74 283.1 393 41.7
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 7.5e-66 256.1 209 58.9
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 2.6e-58 231.1 187 56.1
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.2e-47 195.7 322 37.0
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 6.6e-46 189.9 221 47.5
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.4e-43 182.2 159 50.3
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 5.3e-35 153.7 131 52.7
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 9.9e-34 149.4 148 52.0
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-33 148.7 306 32.0
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.7e-33 148.7 146 50.0
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 2.1e-28 131.7 193 42.5
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 4.8e-28 130.6 204 37.3
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 6.2e-28 130.2 111 56.8
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 5.3e-27 127.1 89 60.7
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 6.9e-27 126.7 194 39.2
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.3e-21 107.8 247 30.0
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.5e-18 99.0 136 43.4
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 1.5e-13 82.4 43 79.1
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 2.5e-13 81.6 68 52.9
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.3e-12 79.3 59 52.5
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 1.9e-08 65.5 360 22.5
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 5.5e-08 63.9 424 20.8
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 5.5e-08 63.9 360 22.2
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 5.5e-08 63.9 361 23.0
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 1.2e-07 62.8 361 22.7
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 2.1e-07 62.0 359 21.2
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 3.6e-07 61.2 370 21.9
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 4.7e-07 60.8 360 21.9
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 4.7e-07 60.8 359 21.7
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 6.1e-07 60.5 70 52.9
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 7.9e-07 60.1 375 21.9
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 1.0e-06 59.7 360 21.7
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 1.0e-06 59.7 361 21.6
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 1.8e-06 58.9 361 22.4
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 2.3e-06 58.5 514 20.8
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 2.3e-06 58.5 391 22.0
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 3.0e-06 58.2 366 22.7
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 3.9e-06 57.8 384 21.9
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 3.9e-06 57.8 391 21.5
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 6.7e-06 57.0 62 51.6
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 8.8e-06 56.6 361 22.2
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 8.8e-06 56.6 361 23.3


User provided reference genes

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