Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G18050 Arabidopsis lyrata HOM05D016399 ORTHO05D018437 1.4e-90 336.3 173 100.0
AL3G18080 Arabidopsis lyrata HOM05D016399 ORTHO05D018437 1.4e-90 336.3 173 100.0
AL3G18190 Arabidopsis lyrata HOM05D016399 ORTHO05D018437 1.8e-85 319.3 173 96.0
AT3G06040 Arabidopsis thaliana HOM05D001156 ORTHO05D001006 9.8e-15 84.3 150 38.7
Thhalv10021590m.g Eutrema salsugineum HOM05D001156 ORTHO05D001006 3.7e-14 82.4 152 38.8
Sp3g04990 Schrenkiella parvula HOM05D001156 ORTHO05D001006 3.7e-14 82.4 152 39.5
AL3G16880 Arabidopsis lyrata HOM05D001156 ORTHO05D001006 4.8e-14 82.0 150 38.7
Carub.0003s0547 Capsella rubella HOM05D001156 ORTHO05D001006 6.3e-14 81.6 152 39.5
Solyc09g010030.3 Solanum lycopersicum HOM05D001156 ORTHO05D001006 1.1e-13 80.9 155 38.1
Sopen09g004770 Solanum pennellii HOM05D001156 ORTHO05D001006 1.4e-13 80.5 155 38.1
Atru.chr9.2482 Acer truncatum HOM05D001156 ORTHO05D001006 2.4e-13 79.7 171 36.3
Cpa.g.sc286.9 Carica papaya HOM05D001156 ORTHO05D001006 2.4e-13 79.7 175 37.7
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 3.1e-13 79.3 154 38.3
CARHR080540 Cardamine hirsuta HOM05D001156 ORTHO05D001006 5.4e-13 78.6 151 37.7
ClCG06G015740 Citrullus lanatus HOM05D001156 ORTHO05D001006 5.4e-13 78.6 178 37.6
Rhsim08G0172800 Rhododendron simsii HOM05D001156 ORTHO05D001006 5.4e-13 78.6 179 38.0
PGSC0003DMG400008867 Solanum tuberosum HOM05D001156 ORTHO05D001006 5.4e-13 78.6 155 36.8
Rhsim08G0172700 Rhododendron simsii HOM05D001156 ORTHO05D000024 7.0e-13 78.2 172 37.8
unitig_26.g10136 Utricularia gibba HOM05D001156 ORTHO05D001006 7.0e-13 78.2 152 37.5
A05p41960 Brassica napus HOM05D001156 ORTHO05D001006 9.1e-13 77.8 152 37.5
BraA05t22918Z Brassica rapa HOM05D001156 ORTHO05D001006 9.1e-13 77.8 152 37.5
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 9.1e-13 77.8 175 36.6
BcaC05g30063 Brassica carinata HOM05D001156 ORTHO05D001006 1.2e-12 77.4 153 37.3
C05p61210 Brassica napus HOM05D001156 ORTHO05D001006 1.2e-12 77.4 153 37.3
BolC5t34781H Brassica oleracea HOM05D001156 ORTHO05D001006 1.2e-12 77.4 153 37.3
Duzib205G0148 Durio zibethinus HOM05D001156 ORTHO05D001006 1.2e-12 77.4 154 37.0
CAN.G397.75 Capsicum annuum HOM05D001156 ORTHO05D001006 1.6e-12 77.0 154 36.4
Prupe.5G173000 Prunus persica HOM05D001156 ORTHO05D001006 1.6e-12 77.0 178 37.1
THA.LOC104822304 Tarenaya hassleriana HOM05D001156 ORTHO05D001006 1.6e-12 77.0 176 36.9
CsaV3_3G028630 Cucumis sativus L. HOM05D001156 ORTHO05D001006 2.7e-12 76.3 178 37.1
Eucgr.D02092 Eucalyptus grandis HOM05D001156 ORTHO05D001006 2.7e-12 76.3 195 35.9
PGR102G0269 Punica granatum HOM05D001156 ORTHO05D001006 3.5e-12 75.9 195 34.9
vmacro19392 Vaccinium macrocarpon HOM05D001156 ORTHO05D001006 3.5e-12 75.9 192 35.9
Psat1g164640 Pisum sativum HOM05D001156 ORTHO05D001006 4.5e-12 75.5 153 38.6
TPR.G8034 Trifolium pratense HOM05D001156 ORTHO05D001006 4.5e-12 75.5 153 37.9
MELO3C003920.2 Cucumis melo HOM05D001156 ORTHO05D001006 5.9e-12 75.1 178 37.1
HanXRQChr07g0196421 Helianthus annuus HOM05D001156 ORTHO05D001006 5.9e-12 75.1 188 35.6
QL10p015865 Quercus lobata HOM05D001156 ORTHO05D001006 5.9e-12 75.1 178 36.5
Thecc.03G013100 Theobroma cacao HOM05D001156 ORTHO05D001006 5.9e-12 75.1 189 35.4
Actinidia19323 Actinidia chinensis HOM05D001156 ORTHO05D000024 7.7e-12 74.7 179 35.8
HanXRQChr05g0156251 Helianthus annuus HOM05D001156 ORTHO05D001006 7.7e-12 74.7 192 34.9
MD06G1173500 Malus domestica HOM05D001156 ORTHO05D001006 7.7e-12 74.7 178 36.5
Phvul.006G124100 Phaseolus vulgaris HOM05D001156 ORTHO05D001006 7.7e-12 74.7 153 37.9
Sc12g0005310 Simmondsia chinensis HOM05D001156 ORTHO05D001006 7.7e-12 74.7 155 38.1
ECA247G0150 Erigeron canadensis HOM05D001156 ORTHO05D001006 1.0e-11 74.3 162 37.7
TAR622G0652 Trochodendron aralioides HOM05D001156 ORTHO05D001006 1.0e-11 74.3 153 37.3
CSS0016934 Camellia sinensis var. sinensis HOM05D001156 ORTHO05D001006 1.3e-11 73.9 177 35.0
Dinv02539 Davidia involucrata HOM05D002723 ORTHO05D003240 1.3e-11 73.9 178 36.0
Gohir.A12G274300 Gossypium hirsutum HOM05D001156 ORTHO05D001006 1.3e-11 73.9 195 33.8
MD14G1180000 Malus domestica HOM05D001156 ORTHO05D001006 1.3e-11 73.9 154 37.0
MBI10_g06740_MAGBIO Magnolia biondii HOM05D001156 ORTHO05D001006 1.7e-11 73.6 178 37.1
THA.LOC104802756 Tarenaya hassleriana HOM05D001156 ORTHO05D001006 1.7e-11 73.6 176 36.4
Medtr2g031760 Medicago truncatula HOM05D001156 ORTHO05D001006 2.2e-11 73.2 153 37.3
Nitab4.5_0001875g0090 Nicotiana tabacum HOM05D001156 ORTHO05D001006 2.2e-11 73.2 177 36.2
Aa31LG5G16530 Aethionema arabicum HOM05D001156 ORTHO05D001006 2.9e-11 72.8 152 37.5
Gohir.D12G275000 Gossypium hirsutum HOM05D001156 ORTHO05D001006 2.9e-11 72.8 197 33.5
SalBow6G0603 Salvia bowleyana HOM05D001156 ORTHO05D001006 2.9e-11 72.8 179 34.1
HPP92_008592 Vanilla planifolia HOM05D001156 ORTHO05D001006 2.9e-11 72.8 174 35.6
VMungo0540G0215 Vigna mungo HOM05D001156 ORTHO05D001006 2.9e-11 72.8 202 35.6
MSTRG.17770 Avicennia marina HOM05D001156 ORTHO05D001006 3.8e-11 72.4 172 33.7
Gorai.008G295500 Gossypium raimondii HOM05D001156 ORTHO05D001006 3.8e-11 72.4 181 35.4
Manes.06G105200 Manihot esculenta HOM05D001156 ORTHO05D001006 3.8e-11 72.4 178 36.0
Haze_07504 Corylus avellana HOM05D001156 ORTHO05D001006 5.0e-11 72.0 178 35.4
Glyma.15G134800 Glycine max HOM05D001156 ORTHO05D001006 5.0e-11 72.0 203 34.5
Hma1.2p1_0701F.1_g205880 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 5.0e-11 72.0 155 36.8
TWI14G1176 Tripterygium wilfordii HOM05D001156 ORTHO05D001006 5.0e-11 72.0 194 33.5
AUR62008204 Chenopodium quinoa HOM05D001156 ORTHO05D001006 6.5e-11 71.6 153 35.9
AUR62030957 Chenopodium quinoa HOM05D001156 ORTHO05D001006 6.5e-11 71.6 153 35.9
Glyma.09G029000 Glycine max HOM05D001156 ORTHO05D001006 6.5e-11 71.6 202 34.7
Hma1.2p1_2409F.1_g321500 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 6.5e-11 71.6 155 35.5
Sed0004231 Sechium edule HOM05D001156 ORTHO05D001006 6.5e-11 71.6 187 33.2
CANSAT80G0830 Cannabis sativa HOM05D001156 ORTHO05D001006 8.5e-11 71.2 194 34.5
Cfa019137 Carpinus fangiana HOM05D001156 ORTHO05D001006 8.5e-11 71.2 178 34.8
Dinv20649 Davidia involucrata HOM05D001156 ORTHO05D001006 8.5e-11 71.2 199 32.7
ECA246G0236 Erigeron canadensis HOM05D001156 ORTHO05D001006 8.5e-11 71.2 154 35.7
PSO339G3237 Papaver somniferum HOM05D001156 ORTHO05D001006 8.5e-11 71.2 180 35.0
TWI39G0852 Tripterygium wilfordii HOM05D001156 ORTHO05D001006 8.5e-11 71.2 194 34.5
ATR0068G065 Amborella trichopoda HOM05D001156 ORTHO05D001006 1.1e-10 70.9 178 35.4
arahy.Tifrunner.gnm1.ann1.7WX4FN Arachis hypogaea HOM05D001156 ORTHO05D001006 1.5e-10 70.5 153 34.6
CiPaw.11G025700 Carya illinoinensis HOM05D001156 ORTHO05D001006 1.5e-10 70.5 177 35.0
Lj6g0014938 Lotus japonicus HOM05D001156 ORTHO05D001006 1.5e-10 70.5 202 33.7
TAR371G0150 Trochodendron aralioides HOM05D001156 ORTHO05D001006 1.5e-10 70.5 177 35.6
Aqoxy6G01858 Aquilegia oxysepala HOM05D001156 ORTHO05D001006 1.9e-10 70.1 154 35.1
Ca_00920_v3 Cicer arietinum L. HOM05D001156 ORTHO05D001006 1.9e-10 70.1 154 37.7
Hma1.2p1_0176F.1_g077370 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 1.9e-10 70.1 190 33.2
PSO384G4181 Papaver somniferum HOM05D001156 ORTHO05D001006 1.9e-10 70.1 180 34.4
Aqoxy2G02136 Aquilegia oxysepala HOM05D001156 ORTHO05D001006 2.5e-10 69.7 154 35.7
Nn4g22755 Nelumbo nucifera HOM05D001156 ORTHO05D001006 2.5e-10 69.7 178 36.0
Potri.015G077200 Populus trichocarpa HOM05D001156 ORTHO05D001006 2.5e-10 69.7 177 35.0
Migut.N01934 Erythranthe guttata HOM05D001156 ORTHO05D001006 3.2e-10 69.3 197 32.0
Lalb_Chr18g0058261 Lupinus albus HOM05D001156 ORTHO05D001006 3.2e-10 69.3 153 35.3
Sabra15G0101900 Salix brachista HOM05D001156 ORTHO05D001006 3.2e-10 69.3 191 33.5
Oeu018233.1 Olea europaea HOM05D001156 ORTHO05D001006 4.2e-10 68.9 179 34.1
FAN08G0627 Fragaria x ananassa HOM05D001156 ORTHO05D001006 5.5e-10 68.6 176 34.1
Peaxi162Scf00047g02423 Petunia axillaris HOM05D001156 ORTHO05D001006 7.2e-10 68.2 190 33.7
Cc11_g12810 Coffea canephora HOM05D001156 ORTHO05D001006 1.2e-09 67.4 192 33.3
Lju470C11T7 Lonicera japonica HOM05D001156 ORTHO05D001006 1.2e-09 67.4 177 33.3
PSO541G0845 Papaver somniferum HOM05D001156 ORTHO05D001006 1.2e-09 67.4 180 35.0
Ah.02g110810 Amaranthus hybridus HOM05D001156 ORTHO05D001006 1.6e-09 67.0 153 35.3
DCAR_026138 Daucus carota HOM05D001156 ORTHO05D001006 1.6e-09 67.0 190 30.0
FAN13G2117 Fragaria x ananassa HOM05D001156 ORTHO05D001006 1.6e-09 67.0 176 34.1
PSO675G7370 Papaver somniferum HOM05D001156 ORTHO05D001006 1.6e-09 67.0 180 33.9
FvH4_5g05340 Fragaria vesca HOM05D001156 ORTHO05D001006 2.1e-09 66.6 176 34.1
FAN04G1980 Fragaria x ananassa HOM05D001156 ORTHO05D001006 2.1e-09 66.6 176 34.1
Ciclev10012849m.g Citrus clementina HOM05D001156 ORTHO05D001006 2.7e-09 66.2 178 32.6
Cc00_g05000 Coffea canephora HOM05D001156 ORTHO05D001006 2.7e-09 66.2 195 33.8
Manes.14G065500 Manihot esculenta HOM05D001156 ORTHO05D001006 2.7e-09 66.2 178 34.3
Cc00_g05020 Coffea canephora HOM05D001156 ORTHO05D001006 3.6e-09 65.9 195 33.8
EL10Ac5g10741 Beta vulgaris HOM05D001156 ORTHO05D001006 4.7e-09 65.5 153 35.3
FAN18G2375 Fragaria x ananassa HOM05D001156 ORTHO05D001006 4.7e-09 65.5 176 34.1
RcHm_v2.0_Chr7g0193501 Rosa chinensis HOM05D001156 ORTHO05D001006 4.7e-09 65.5 176 33.5
SGA_v2.0_scaffold62G21596 Striga asiatica HOM05D001156 ORTHO05D001006 4.7e-09 65.5 175 33.7
Lsat_1_v5_gn_5_14700 Lactuca sativa HOM05D001156 ORTHO05D001006 6.1e-09 65.1 171 33.3
SEGI_23469 Sequoiadendron giganteum HOM05D001156 ORTHO05D001006 1.4e-08 63.9 165 32.7
COL.COLO4_30043 Corchorus olitorius HOM05D001156 ORTHO05D001006 3.0e-08 62.8 171 32.2
MELO3C011871.2 Cucumis melo HOM05D001156 ORTHO05D001006 5.2e-08 62.0 87 46.0
arahy.Tifrunner.gnm1.ann1.JE3SS2 Arachis hypogaea HOM05D001156 ORTHO05D001006 2.6e-07 59.7 87 43.7
ATR0752G124 Amborella trichopoda HOM05D001156 ORTHO05D001006 4.4e-07 58.9 178 32.0
BcaC01g04321 Brassica carinata HOM05D001156 ORTHO05D001006 4.4e-07 58.9 142 35.2
C03p41940 Brassica napus HOM05D001156 ORTHO05D001006 4.4e-07 58.9 143 35.0
SHI16975 Sapria himalayana HOM05D001156 ORTHO05D001006 5.7e-07 58.5 149 31.5
Zm00001eb205850 Zea mays HOM05D001156 ORTHO05D001006 5.7e-07 58.5 154 31.8
BcaC05g30064 Brassica carinata HOM05D001156 ORTHO05D001006 7.5e-07 58.2 88 44.3
Lj5P124T52 Lonicera japonica HOM05D001156 ORTHO05D001006 7.5e-07 58.2 93 41.9
BolC3t16477H Brassica oleracea HOM05D001156 ORTHO05D043196 1.3e-06 57.4 135 35.6
Nitab4.5_0000073g0570 Nicotiana tabacum HOM05D001156 ORTHO05D001006 1.3e-06 57.4 143 32.2
Zm00001eb235930 Zea mays HOM05D001156 ORTHO05D001006 1.7e-06 57.0 155 31.0
BcaB02g09982 Brassica carinata HOM05D016399 ORTHO05D018437 2.2e-06 56.6 77 42.9
A03p34480 Brassica napus HOM05D001156 ORTHO05D001006 2.8e-06 56.2 126 35.7
A07p17050 Brassica napus HOM05D016399 ORTHO05D018437 2.8e-06 56.2 81 43.2
BraA07t29432Z Brassica rapa HOM05D016399 ORTHO05D018437 2.8e-06 56.2 81 43.2
Os02g0198900 Oryza sativa ssp. japonica HOM05D001156 ORTHO05D001006 2.8e-06 56.2 156 31.4
CDE05G0428 Ceratophyllum demersum HOM05D001156 ORTHO05D001006 3.7e-06 55.8 88 42.0
SMO270G0043 Selaginella moellendorffii HOM05D001156 ORTHO05D001006 3.7e-06 55.8 79 41.8
AL831U10010 Arabidopsis lyrata HOM05D001298 ORTHO05D001110 6.3e-06 55.1 30 90.0
C07p24910 Brassica napus HOM05D016399 ORTHO05D018437 8.3e-06 54.7 81 43.2


User provided reference genes

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