Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G15880 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.6e-19 98.6 54 100.0
AL4G11650 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.3e-18 95.5 54 96.3
AL5G17260 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
AL5G17330 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
BcaC03g17492 Brassica carinata HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
A02p35660 Brassica napus HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
A06p40860 Brassica napus HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
C02p54500 Brassica napus HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
BolC2t11513H Brassica oleracea HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
BraA02t08568Z Brassica rapa HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
BraA06t27008Z Brassica rapa HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
Carub.0005s0635 Capsella rubella HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
Carub.0005s0637 Capsella rubella HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
Sp2g16890 Schrenkiella parvula HOM05D003530 ORTHO05D004017 1.4e-15 85.5 50 94.0
AT3G27830 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 1.8e-15 85.1 50 92.0
AT3G27850 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 1.8e-15 85.1 50 92.0
Aa31LG9G1280 Aethionema arabicum HOM05D003530 ORTHO05D004017 3.0e-15 84.3 50 92.0
BcaB07g30141 Brassica carinata HOM05D003530 ORTHO05D004017 3.0e-15 84.3 50 92.0
A09p03530 Brassica napus HOM05D003530 ORTHO05D004017 3.0e-15 84.3 50 92.0
BraA09t35991Z Brassica rapa HOM05D003530 ORTHO05D004017 3.0e-15 84.3 50 92.0
Thhalv10004960m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 3.0e-15 84.3 50 92.0
Thhalv10004964m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 3.0e-15 84.3 50 92.0
BcaC06g33779 Brassica carinata HOM05D003530 ORTHO05D004017 4.0e-15 84.0 50 92.0
BcaC06g33780 Brassica carinata HOM05D003530 ORTHO05D004017 4.0e-15 84.0 50 92.0
C07p37010 Brassica napus HOM05D003530 ORTHO05D004017 4.0e-15 84.0 50 92.0
BolC7t44213H Brassica oleracea HOM05D003530 ORTHO05D004017 4.0e-15 84.0 50 92.0
Aa31LG2G4880 Aethionema arabicum HOM05D003530 ORTHO05D004017 6.8e-15 83.2 50 90.0
BcaC06g30958 Brassica carinata HOM05D003530 ORTHO05D004017 6.8e-15 83.2 50 90.0
BcaC06g30959 Brassica carinata HOM05D003530 ORTHO05D004017 6.8e-15 83.2 50 90.0
A06p40870 Brassica napus HOM05D003530 ORTHO05D004017 6.8e-15 83.2 50 90.0
BraA06t27009Z Brassica rapa HOM05D003530 ORTHO05D004017 6.8e-15 83.2 50 90.0
CARHR149300 Cardamine hirsuta HOM05D003530 ORTHO05D004017 8.9e-15 82.8 50 90.0
CARHR149320 Cardamine hirsuta HOM05D003530 ORTHO05D004017 8.9e-15 82.8 50 90.0
BcaC06g33781 Brassica carinata HOM05D003530 ORTHO05D004017 1.5e-14 82.0 50 88.0
C07p37000 Brassica napus HOM05D003530 ORTHO05D004017 1.5e-14 82.0 50 88.0
BolC7t44212H Brassica oleracea HOM05D003530 ORTHO05D004017 1.5e-14 82.0 50 88.0
Manes.04G063300 Manihot esculenta HOM05D003530 ORTHO05D004017 4.4e-14 80.5 50 88.0
Hma1.2p1_0858F.1_g229290 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 5.7e-14 80.1 50 88.0
THA.LOC104805389 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 7.5e-14 79.7 50 86.0
Haze_14690 Corylus avellana HOM05D003530 ORTHO05D004017 9.8e-14 79.3 50 86.0
PGR142G3122 Punica granatum HOM05D003530 ORTHO05D004017 9.8e-14 79.3 50 86.0
QL02p075946 Quercus lobata HOM05D003530 ORTHO05D004017 9.8e-14 79.3 50 86.0
Atru.chr6.2226 Acer truncatum HOM05D003530 ORTHO05D004017 1.3e-13 79.0 50 84.0
Atru.chr6.2319 Acer truncatum HOM05D003530 ORTHO05D004017 1.3e-13 79.0 50 84.0
Cfa007412 Carpinus fangiana HOM05D003530 ORTHO05D004017 1.3e-13 79.0 50 84.0
Nitab4.5_0008510g0020 Nicotiana tabacum HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
Nitab4.5_0009062g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
PGR083G1866 Punica granatum HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
RcHm_v2.0_Chr2g0172281 Rosa chinensis HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
Solyc02g086730.3 Solanum lycopersicum HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
Solyc02g086740.1 Solanum lycopersicum HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
Sopen02g031490 Solanum pennellii HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
Sopen02g031500 Solanum pennellii HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
PGSC0003DMG400000487 Solanum tuberosum HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
PGSC0003DMG400000488 Solanum tuberosum HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
THA.LOC104823944 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 2.2e-13 78.2 50 84.0
Dinv33477 Davidia involucrata HOM05D003530 ORTHO05D004017 2.8e-13 77.8 50 84.0
Glyma.11G099300 Glycine max HOM05D003530 ORTHO05D004017 2.8e-13 77.8 50 82.0
Hma1.2p1_0993F.1_g245370 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 2.8e-13 77.8 50 84.0
Lj2g0009781 Lotus japonicus HOM05D003530 ORTHO05D004017 2.8e-13 77.8 50 84.0
Lalb_Chr17g0337251 Lupinus albus HOM05D003530 ORTHO05D004017 2.8e-13 77.8 50 82.0
Sabra16G0225800 Salix brachista HOM05D003530 ORTHO05D004017 2.8e-13 77.8 50 82.0
CiPaw.04G026100 Carya illinoinensis HOM05D003530 ORTHO05D004017 3.7e-13 77.4 50 84.0
ClCG10G014140 Citrullus lanatus HOM05D003530 ORTHO05D004017 3.7e-13 77.4 50 82.0
MELO3C009965.2 Cucumis melo HOM05D003530 ORTHO05D004017 3.7e-13 77.4 50 82.0
VMungo1127G1762 Vigna mungo HOM05D003530 ORTHO05D004017 3.7e-13 77.4 50 82.0
CANSAT64G2824 Cannabis sativa HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
CiPaw.03G039700 Carya illinoinensis HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
ECA240G2852 Erigeron canadensis HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
FvH4_6g50910 Fragaria vesca HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
FAN02G4450 Fragaria x ananassa HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
FAN05G3949 Fragaria x ananassa HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
FAN09G0266 Fragaria x ananassa HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
FAN14G3916 Fragaria x ananassa HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 82.0
Potri.001G346100 Populus trichocarpa HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 84.0
Sabra16G0225100 Salix brachista HOM05D003530 ORTHO05D004017 4.9e-13 77.0 50 84.0
arahy.Tifrunner.gnm1.ann1.816STY Arachis hypogaea HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 82.0
ClCG09G019050 Citrullus lanatus HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 82.0
COL.COLO4_29002 Corchorus olitorius HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 82.0
MELO3C021553.2 Cucumis melo HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 82.0
Glyma.12G025400 Glycine max HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 80.0
Lsat_1_v5_gn_2_91740 Lactuca sativa HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 80.0
MD09G1031000 Malus domestica HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 80.0
MD17G1032900 Malus domestica HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 80.0
Nitab4.5_0006542g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 82.0
Phvul.011G027700 Phaseolus vulgaris HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 82.0
Prupe.3G286600 Prunus persica HOM05D003530 ORTHO05D004017 6.3e-13 76.6 50 80.0
Ciclev10016852m.g Citrus clementina HOM05D003530 ORTHO05D004017 8.3e-13 76.3 50 80.0
CsaV3_3G042510 Cucumis sativus L. HOM05D003530 ORTHO05D004017 8.3e-13 76.3 50 80.0
PSO063G4512 Papaver somniferum HOM05D003530 ORTHO05D004017 8.3e-13 76.3 50 82.0
Sed0017530 Sechium edule HOM05D003530 ORTHO05D004017 8.3e-13 76.3 50 80.0
Ca_04182_v3 Cicer arietinum L. HOM05D003530 ORTHO05D004017 1.1e-12 75.9 50 82.0
Cc07_g02040 Coffea canephora HOM05D003530 ORTHO05D004017 1.1e-12 75.9 50 80.0
Gohir.A08G009500 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.1e-12 75.9 50 80.0
Nitab4.5_0003505g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.1e-12 75.9 50 78.0
Nitab4.5_0004321g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.1e-12 75.9 50 78.0
SalBow1G5378 Salvia bowleyana HOM05D003530 ORTHO05D004017 1.1e-12 75.9 50 82.0
Thecc.04G011600 Theobroma cacao HOM05D003530 ORTHO05D004017 1.1e-12 75.9 50 80.0
Aqoxy3G02924 Aquilegia oxysepala HOM05D003530 ORTHO05D004017 1.4e-12 75.5 50 82.0
Lsat_1_v5_gn_4_182901 Lactuca sativa HOM05D003530 ORTHO05D004017 1.4e-12 75.5 50 78.0
Manes.11G104900 Manihot esculenta HOM05D003530 ORTHO05D004017 1.4e-12 75.5 50 80.0
PSO832G4560 Papaver somniferum HOM05D003530 ORTHO05D004017 1.4e-12 75.5 50 82.0
Peaxi162Scf00129g10129 Petunia axillaris HOM05D001272 ORTHO05D001843 1.4e-12 75.5 50 80.0
Peaxi162Scf00700g00054 Petunia axillaris HOM05D003530 ORTHO05D004017 1.4e-12 75.5 50 80.0
Rhsim08G0053400 Rhododendron simsii HOM05D003530 ORTHO05D004017 1.4e-12 75.5 50 80.0
TWI12G0626 Tripterygium wilfordii HOM05D003530 ORTHO05D004017 1.4e-12 75.5 50 80.0
Gohir.D07G228100 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.8e-12 75.1 50 80.0
Gorai.001G263100 Gossypium raimondii HOM05D003530 ORTHO05D004017 1.8e-12 75.1 50 80.0
Medtr6g006060 Medicago truncatula HOM05D003530 ORTHO05D004017 1.8e-12 75.1 50 80.0
Oeu054688.1 Olea europaea HOM05D003530 ORTHO05D004017 1.8e-12 75.1 50 80.0
Psat1g056240 Pisum sativum HOM05D003530 ORTHO05D004017 1.8e-12 75.1 50 80.0
DCAR_021694 Daucus carota HOM05D003530 ORTHO05D004017 2.4e-12 74.7 50 78.0
LjContig00484g0021782 Lotus japonicus HOM05D003530 ORTHO05D004017 2.4e-12 74.7 50 80.0
Sed0013614 Sechium edule HOM05D003530 ORTHO05D004017 2.4e-12 74.7 50 78.0
Gohir.A05G358400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 3.2e-12 74.3 50 78.0
Gohir.D08G019600 Gossypium hirsutum HOM05D003530 ORTHO05D004017 3.2e-12 74.3 50 78.0
Gorai.004G014100 Gossypium raimondii HOM05D003530 ORTHO05D004017 3.2e-12 74.3 50 78.0
Gorai.012G062600 Gossypium raimondii HOM05D003530 ORTHO05D004017 3.2e-12 74.3 50 78.0
HanXRQChr07g0198851 Helianthus annuus HOM05D003530 ORTHO05D004017 3.2e-12 74.3 50 78.0
CAN.G206.18 Capsicum annuum HOM05D003530 ORTHO05D004017 4.1e-12 73.9 50 78.0
Migut.H00104 Erythranthe guttata HOM05D003530 ORTHO05D004017 4.1e-12 73.9 50 80.0
Oeu014862.1 Olea europaea HOM05D003530 ORTHO05D004017 4.1e-12 73.9 50 78.0
Rhsim10G0020100 Rhododendron simsii HOM05D003530 ORTHO05D004017 4.1e-12 73.9 50 78.0
GSVIVG01032454001 Vitis vinifera HOM05D003530 ORTHO05D004017 4.1e-12 73.9 50 78.0
CDE10G0273 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 5.4e-12 73.6 50 78.0
CDE10G0897 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 5.4e-12 73.6 50 78.0
Lju41C36T20 Lonicera japonica HOM05D003530 ORTHO05D004017 5.4e-12 73.6 50 76.0
Lsat_1_v5_gn_2_14440 Lactuca sativa HOM05D003530 ORTHO05D004017 7.0e-12 73.2 50 74.0
PSO017G1080 Papaver somniferum HOM05D003530 ORTHO05D004017 7.0e-12 73.2 50 78.0
PSO478G3901 Papaver somniferum HOM05D003530 ORTHO05D004017 7.0e-12 73.2 50 78.0
SalBow7G4259 Salvia bowleyana HOM05D003530 ORTHO05D004017 9.2e-12 72.8 50 78.0
AUR62019712 Chenopodium quinoa HOM05D003530 ORTHO05D004017 1.2e-11 72.4 48 79.2
Gohir.A07G221400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.2e-11 72.4 50 78.0
Lalb_Chr06g0175931 Lupinus albus HOM05D003530 ORTHO05D004017 1.2e-11 72.4 50 76.0
Ah.07g200110 Amaranthus hybridus HOM05D003530 ORTHO05D004017 1.6e-11 72.0 48 79.2
Ah.12g054660 Amaranthus hybridus HOM05D003530 ORTHO05D004017 1.6e-11 72.0 48 79.2
EL10Ac4g08602 Beta vulgaris HOM05D003530 ORTHO05D004017 1.6e-11 72.0 48 79.2
CSS0007307 Camellia sinensis var. sinensis HOM05D003530 ORTHO05D004017 1.6e-11 72.0 50 76.0
Migut.K01378 Erythranthe guttata HOM05D003530 ORTHO05D004017 1.6e-11 72.0 50 76.0
MBI10_g28017_MAGBIO Magnolia biondii HOM05D003530 ORTHO05D004017 1.6e-11 72.0 50 76.0
Gohir.D04G055700 Gossypium hirsutum HOM05D003530 ORTHO05D004017 2.0e-11 71.6 50 76.0
Nn3g16848 Nelumbo nucifera HOM05D003530 ORTHO05D004017 2.0e-11 71.6 50 76.0
Sed0027802 Sechium edule HOM05D003530 ORTHO05D004017 2.0e-11 71.6 50 74.0
TPR.G27369 Trifolium pratense HOM05D003530 ORTHO05D004017 2.0e-11 71.6 50 76.0
TAR622G1176 Trochodendron aralioides HOM05D003530 ORTHO05D004017 2.7e-11 71.2 50 74.0
QL02p075960 Quercus lobata HOM05D003530 ORTHO05D004017 3.5e-11 70.9 50 78.0
SMO356G0309 Selaginella moellendorffii HOM05D003530 ORTHO05D004017 3.5e-11 70.9 50 72.0
SGA_v2.0_scaffold40G15640 Striga asiatica HOM05D003530 ORTHO05D004017 3.5e-11 70.9 50 76.0
AT3G27840 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 4.5e-11 70.5 50 72.0
Actinidia35752 Actinidia chinensis HOM05D003530 ORTHO05D004017 5.9e-11 70.1 50 74.0
DCAR_015053 Daucus carota HOM05D003530 ORTHO05D004017 5.9e-11 70.1 51 76.5
unitig_62.g23149 Utricularia gibba HOM05D003530 ORTHO05D004017 5.9e-11 70.1 50 74.0
Zm00001eb359610 Zea mays HOM05D003530 ORTHO05D004017 5.9e-11 70.1 50 76.0
ATR0789G179 Amborella trichopoda HOM05D003530 ORTHO05D004017 7.8e-11 69.7 50 72.0
Pp3c4_24130 Physcomitrium patens HOM05D003530 ORTHO05D004017 7.8e-11 69.7 50 72.0
unitig_52.g17666 Utricularia gibba HOM05D003530 ORTHO05D004017 7.8e-11 69.7 50 72.0
Pp3c16_2080 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.3e-10 68.9 50 72.0
Pp3c26_10990 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.7e-10 68.6 50 70.0
Os05g0568300 Oryza sativa ssp. japonica HOM05D003530 ORTHO05D004017 2.3e-10 68.2 50 74.0
Pp3c25_1440 Physcomitrium patens HOM05D003530 ORTHO05D004017 2.3e-10 68.2 50 72.0
Pp3c5_2700 Physcomitrium patens HOM05D003530 ORTHO05D004017 2.9e-10 67.8 50 70.0
AL5G17310 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 8.6e-10 66.2 50 70.0
Dinv35079 Davidia involucrata HOM05D003530 ORTHO05D004017 1.1e-09 65.9 43 81.4
SGA_v2.0_scaffold30G12445 Striga asiatica HOM05D003530 ORTHO05D004017 1.1e-09 65.9 50 70.0
Nitab4.5_0005820g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.5e-09 65.5 50 74.0
SEGI_29600 Sequoiadendron giganteum HOM05D003530 ORTHO05D004017 1.5e-09 65.5 50 64.0
HPP92_005137 Vanilla planifolia HOM05D003530 ORTHO05D004017 1.5e-09 65.5 50 66.0
Duzib147G0262 Durio zibethinus HOM05D003530 ORTHO05D004017 1.9e-09 65.1 50 68.0
Cpa.g.sc39.100 Carica papaya HOM05D003530 ORTHO05D004017 3.3e-09 64.3 49 75.5
Sc03g0011050 Simmondsia chinensis HOM05D003530 ORTHO05D004017 4.3e-09 63.9 48 68.8
BcaB01g03824 Brassica carinata HOM05D003530 ORTHO05D004017 1.6e-08 62.0 50 68.0
AUR62037980 Chenopodium quinoa HOM05D003530 ORTHO05D004017 1.6e-08 62.0 43 76.7
BcaC01g05648 Brassica carinata HOM05D003530 ORTHO05D004017 2.8e-08 61.2 50 68.0
Carub.0005s0636 Capsella rubella HOM05D003530 ORTHO05D004017 4.0e-07 57.4 51 64.7
Mapoly0071s0038 Marchantia polymorpha HOM05D003530 ORTHO05D004017 5.2e-07 57.0 50 56.0
TAR374G1092 Trochodendron aralioides HOM05D003530 ORTHO05D004017 5.2e-07 57.0 50 66.0
Peaxi162Scf00481g00619 Petunia axillaris HOM05D003530 ORTHO05D004017 1.2e-06 55.8 35 80.0
ATR1156G070 Amborella trichopoda HOM05D003530 ORTHO05D004017 2.6e-06 54.7 49 57.1
C09p03760 Brassica napus HOM05D003530 ORTHO05D004017 3.4e-06 54.3 30 93.3
BolC9t53296H Brassica oleracea HOM05D003530 ORTHO05D004017 3.4e-06 54.3 32 87.5


User provided reference genes

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